Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4113 and GFF4114 are separated by 210 nucleotides GFF4114 and GFF4115 overlap by 4 nucleotides
GFF4113 - Putative tartrate transporter, at 107,352 to 108,692
GFF4113
GFF4114 - HTH-type transcriptional regulator TrpI, at 108,903 to 109,832
GFF4114
GFF4115 - hypothetical protein, at 109,829 to 110,995
GFF4115
Position (kb) 108
109
110 Strain fitness (log2 ratio) -2
-1
0
1
2 at 107.906 kb on - strand, within GFF4113 at 107.906 kb on - strand, within GFF4113 at 107.914 kb on + strand, within GFF4113 at 107.915 kb on - strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.214 kb on - strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.295 kb on + strand, within GFF4113 at 108.295 kb on + strand, within GFF4113 at 108.296 kb on - strand, within GFF4113 at 108.298 kb on - strand, within GFF4113 at 108.355 kb on + strand, within GFF4113 at 108.356 kb on - strand, within GFF4113 at 108.487 kb on + strand, within GFF4113 at 108.585 kb on - strand at 108.697 kb on - strand at 108.697 kb on - strand at 108.791 kb on + strand at 108.792 kb on - strand at 108.792 kb on - strand at 108.799 kb on + strand at 108.799 kb on + strand at 109.024 kb on + strand, within GFF4114 at 109.037 kb on + strand, within GFF4114 at 109.038 kb on - strand, within GFF4114 at 109.085 kb on + strand, within GFF4114 at 109.293 kb on + strand, within GFF4114 at 109.293 kb on + strand, within GFF4114 at 109.422 kb on + strand, within GFF4114 at 109.422 kb on + strand, within GFF4114 at 109.423 kb on - strand, within GFF4114 at 109.547 kb on - strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.575 kb on + strand, within GFF4114 at 109.999 kb on + strand, within GFF4115 at 110.059 kb on + strand, within GFF4115 at 110.059 kb on + strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.060 kb on - strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.070 kb on + strand, within GFF4115 at 110.071 kb on - strand, within GFF4115 at 110.265 kb on + strand, within GFF4115
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 107,906 - GFF4113 0.41 -1.2 107,906 - GFF4113 0.41 -0.1 107,914 + GFF4113 0.42 +1.9 107,915 - GFF4113 0.42 -0.3 108,213 + GFF4113 0.64 -0.2 108,213 + GFF4113 0.64 +0.0 108,213 + GFF4113 0.64 -0.1 108,213 + GFF4113 0.64 -0.2 108,213 + GFF4113 0.64 +0.7 108,214 - GFF4113 0.64 -0.5 108,241 + GFF4113 0.66 -0.0 108,241 + GFF4113 0.66 -0.6 108,241 + GFF4113 0.66 -0.2 108,241 + GFF4113 0.66 +0.6 108,242 - GFF4113 0.66 +1.6 108,242 - GFF4113 0.66 -0.3 108,242 - GFF4113 0.66 +0.7 108,242 - GFF4113 0.66 +1.0 108,242 - GFF4113 0.66 +0.7 108,295 + GFF4113 0.70 +0.3 108,295 + GFF4113 0.70 +0.0 108,296 - GFF4113 0.70 -1.0 108,298 - GFF4113 0.71 +0.1 108,355 + GFF4113 0.75 +0.6 108,356 - GFF4113 0.75 -0.1 108,487 + GFF4113 0.85 -0.4 108,585 - -0.7 108,697 - +0.5 108,697 - +0.1 108,791 + -0.5 108,792 - -0.9 108,792 - -1.1 108,799 + +0.1 108,799 + -1.2 109,024 + GFF4114 0.13 +0.2 109,037 + GFF4114 0.14 +0.6 109,038 - GFF4114 0.15 -2.2 109,085 + GFF4114 0.20 +0.6 109,293 + GFF4114 0.42 +0.8 109,293 + GFF4114 0.42 +0.7 109,422 + GFF4114 0.56 -1.4 109,422 + GFF4114 0.56 -0.2 109,423 - GFF4114 0.56 +0.0 109,547 - GFF4114 0.69 -0.5 109,575 + GFF4114 0.72 +0.4 109,575 + GFF4114 0.72 +1.4 109,575 + GFF4114 0.72 +0.2 109,999 + GFF4115 0.15 -0.2 110,059 + GFF4115 0.20 -0.2 110,059 + GFF4115 0.20 -1.2 110,060 - GFF4115 0.20 -0.3 110,060 - GFF4115 0.20 -0.2 110,060 - GFF4115 0.20 -0.1 110,070 + GFF4115 0.21 -0.2 110,070 + GFF4115 0.21 +0.6 110,070 + GFF4115 0.21 -0.6 110,071 - GFF4115 0.21 -0.7 110,265 + GFF4115 0.37 -1.0
Or see this region's nucleotide sequence