Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4111 and GFF4112 are separated by 90 nucleotides GFF4112 and GFF4113 are separated by 65 nucleotides
GFF4111 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 105,121 to 106,365
GFF4111
GFF4112 - D-apionate oxidoisomerase, at 106,456 to 107,286
GFF4112
GFF4113 - Putative tartrate transporter, at 107,352 to 108,692
GFF4113
Position (kb) 106
107
108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 105.536 kb on + strand, within GFF4111 at 105.897 kb on - strand, within GFF4111 at 106.026 kb on + strand, within GFF4111 at 106.027 kb on - strand, within GFF4111 at 106.048 kb on + strand, within GFF4111 at 106.049 kb on - strand, within GFF4111 at 106.144 kb on - strand, within GFF4111 at 106.628 kb on - strand, within GFF4112 at 106.790 kb on + strand, within GFF4112 at 106.790 kb on + strand, within GFF4112 at 106.790 kb on + strand, within GFF4112 at 106.791 kb on - strand, within GFF4112 at 106.791 kb on - strand, within GFF4112 at 106.791 kb on - strand, within GFF4112 at 106.791 kb on - strand, within GFF4112 at 106.890 kb on - strand, within GFF4112 at 106.958 kb on + strand, within GFF4112 at 106.958 kb on + strand, within GFF4112 at 106.958 kb on + strand, within GFF4112 at 106.958 kb on + strand, within GFF4112 at 106.959 kb on - strand, within GFF4112 at 106.959 kb on - strand, within GFF4112 at 107.239 kb on + strand at 107.239 kb on + strand at 107.239 kb on + strand at 107.240 kb on - strand at 107.240 kb on - strand at 107.240 kb on - strand at 107.346 kb on - strand at 107.393 kb on + strand at 107.394 kb on - strand at 107.683 kb on + strand, within GFF4113 at 107.683 kb on + strand, within GFF4113 at 107.803 kb on + strand, within GFF4113 at 107.804 kb on - strand, within GFF4113 at 107.821 kb on + strand, within GFF4113 at 107.822 kb on - strand, within GFF4113 at 107.822 kb on - strand, within GFF4113 at 107.822 kb on - strand, within GFF4113 at 107.822 kb on - strand, within GFF4113 at 107.906 kb on - strand, within GFF4113 at 107.906 kb on - strand, within GFF4113 at 107.914 kb on + strand, within GFF4113 at 107.915 kb on - strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.213 kb on + strand, within GFF4113 at 108.214 kb on - strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.241 kb on + strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113 at 108.242 kb on - strand, within GFF4113
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 105,536 + GFF4111 0.33 +0.4 105,897 - GFF4111 0.62 +0.9 106,026 + GFF4111 0.73 +0.2 106,027 - GFF4111 0.73 +0.9 106,048 + GFF4111 0.74 -1.6 106,049 - GFF4111 0.75 +2.4 106,144 - GFF4111 0.82 +0.9 106,628 - GFF4112 0.21 +0.4 106,790 + GFF4112 0.40 +0.5 106,790 + GFF4112 0.40 -1.2 106,790 + GFF4112 0.40 +0.2 106,791 - GFF4112 0.40 +0.2 106,791 - GFF4112 0.40 -0.2 106,791 - GFF4112 0.40 +0.2 106,791 - GFF4112 0.40 -0.3 106,890 - GFF4112 0.52 -0.2 106,958 + GFF4112 0.60 -3.6 106,958 + GFF4112 0.60 +0.6 106,958 + GFF4112 0.60 -0.3 106,958 + GFF4112 0.60 -0.2 106,959 - GFF4112 0.61 -0.3 106,959 - GFF4112 0.61 -2.1 107,239 + +0.2 107,239 + -0.5 107,239 + -1.5 107,240 - -0.3 107,240 - -0.6 107,240 - -0.5 107,346 - +0.4 107,393 + +0.8 107,394 - -0.6 107,683 + GFF4113 0.25 -2.8 107,683 + GFF4113 0.25 +0.5 107,803 + GFF4113 0.34 +0.4 107,804 - GFF4113 0.34 +0.5 107,821 + GFF4113 0.35 -0.4 107,822 - GFF4113 0.35 +0.4 107,822 - GFF4113 0.35 -0.9 107,822 - GFF4113 0.35 +0.4 107,822 - GFF4113 0.35 -0.6 107,906 - GFF4113 0.41 -1.2 107,906 - GFF4113 0.41 -0.1 107,914 + GFF4113 0.42 +1.9 107,915 - GFF4113 0.42 -0.3 108,213 + GFF4113 0.64 -0.2 108,213 + GFF4113 0.64 +0.0 108,213 + GFF4113 0.64 -0.1 108,213 + GFF4113 0.64 -0.2 108,213 + GFF4113 0.64 +0.7 108,214 - GFF4113 0.64 -0.5 108,241 + GFF4113 0.66 -0.0 108,241 + GFF4113 0.66 -0.6 108,241 + GFF4113 0.66 -0.2 108,241 + GFF4113 0.66 +0.6 108,242 - GFF4113 0.66 +1.6 108,242 - GFF4113 0.66 -0.3 108,242 - GFF4113 0.66 +0.7 108,242 - GFF4113 0.66 +1.0 108,242 - GFF4113 0.66 +0.7
Or see this region's nucleotide sequence