Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4109 and GFF4110 are separated by 385 nucleotides GFF4110 and GFF4111 overlap by 4 nucleotides
GFF4109 - hypothetical protein, at 100,852 to 103,365
GFF4109
GFF4110 - 3-oxo-isoapionate kinase, at 103,751 to 105,124
GFF4110
GFF4111 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 105,121 to 106,365
GFF4111
Position (kb) 103
104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.902 kb on + strand, within GFF4109 at 103.022 kb on + strand, within GFF4109 at 103.022 kb on + strand, within GFF4109 at 103.022 kb on + strand, within GFF4109 at 103.023 kb on - strand, within GFF4109 at 103.023 kb on - strand, within GFF4109 at 103.288 kb on - strand at 103.332 kb on + strand at 103.333 kb on - strand at 103.425 kb on - strand at 103.457 kb on + strand at 103.506 kb on - strand at 103.506 kb on - strand at 103.506 kb on - strand at 103.721 kb on + strand at 103.721 kb on + strand at 103.824 kb on + strand at 103.825 kb on - strand at 103.930 kb on + strand, within GFF4110 at 103.931 kb on - strand, within GFF4110 at 104.103 kb on + strand, within GFF4110 at 104.358 kb on + strand, within GFF4110 at 104.373 kb on + strand, within GFF4110 at 104.374 kb on - strand, within GFF4110 at 104.662 kb on - strand, within GFF4110 at 104.835 kb on + strand, within GFF4110 at 104.835 kb on + strand, within GFF4110 at 104.836 kb on - strand, within GFF4110 at 105.069 kb on + strand at 105.308 kb on + strand, within GFF4111 at 105.308 kb on + strand, within GFF4111 at 105.308 kb on + strand, within GFF4111 at 105.308 kb on + strand, within GFF4111 at 105.309 kb on - strand, within GFF4111 at 105.309 kb on - strand, within GFF4111 at 105.309 kb on - strand, within GFF4111 at 105.446 kb on + strand, within GFF4111 at 105.536 kb on + strand, within GFF4111 at 105.897 kb on - strand, within GFF4111 at 106.026 kb on + strand, within GFF4111 at 106.027 kb on - strand, within GFF4111 at 106.048 kb on + strand, within GFF4111 at 106.049 kb on - strand, within GFF4111
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 102,902 + GFF4109 0.82 +1.3 103,022 + GFF4109 0.86 -0.3 103,022 + GFF4109 0.86 +0.9 103,022 + GFF4109 0.86 +0.0 103,023 - GFF4109 0.86 +0.9 103,023 - GFF4109 0.86 -0.5 103,288 - +0.2 103,332 + +0.1 103,333 - -0.3 103,425 - -0.2 103,457 + -0.7 103,506 - -1.6 103,506 - -0.3 103,506 - -1.7 103,721 + +0.7 103,721 + +1.1 103,824 + -0.4 103,825 - -0.3 103,930 + GFF4110 0.13 -0.5 103,931 - GFF4110 0.13 -0.2 104,103 + GFF4110 0.26 +0.3 104,358 + GFF4110 0.44 -0.2 104,373 + GFF4110 0.45 +0.1 104,374 - GFF4110 0.45 +1.4 104,662 - GFF4110 0.66 +0.1 104,835 + GFF4110 0.79 +0.7 104,835 + GFF4110 0.79 -2.2 104,836 - GFF4110 0.79 -1.1 105,069 + -0.2 105,308 + GFF4111 0.15 +0.1 105,308 + GFF4111 0.15 -0.0 105,308 + GFF4111 0.15 +0.2 105,308 + GFF4111 0.15 +0.4 105,309 - GFF4111 0.15 -0.3 105,309 - GFF4111 0.15 +1.4 105,309 - GFF4111 0.15 +0.4 105,446 + GFF4111 0.26 +0.4 105,536 + GFF4111 0.33 +0.4 105,897 - GFF4111 0.62 +0.9 106,026 + GFF4111 0.73 +0.2 106,027 - GFF4111 0.73 +0.9 106,048 + GFF4111 0.74 -1.6 106,049 - GFF4111 0.75 +2.4
Or see this region's nucleotide sequence