Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF409 and GFF410 are separated by 216 nucleotides GFF410 and GFF411 are separated by 345 nucleotides GFF411 and GFF412 are separated by 11 nucleotides GFF412 and GFF413 overlap by 22 nucleotides
GFF409 - hypothetical protein, at 422,055 to 422,663
GFF409
GFF410 - DNA-directed RNA polymerase subunit omega, at 422,880 to 423,269
GFF410
GFF411 - hypothetical protein, at 423,615 to 423,932
GFF411
GFF412 - hypothetical protein, at 423,944 to 424,885
GFF412
GFF413 - Glutamate--tRNA ligase, at 424,864 to 425,784
GFF413
Position (kb) 423
424 Strain fitness (log2 ratio) -2
-1
0
1 at 423.401 kb on + strand at 423.401 kb on + strand at 423.401 kb on + strand at 423.401 kb on + strand at 423.402 kb on - strand at 423.434 kb on + strand at 423.435 kb on - strand at 423.435 kb on - strand at 424.011 kb on - strand at 424.011 kb on - strand at 424.148 kb on + strand, within GFF412 at 424.311 kb on - strand, within GFF412 at 424.475 kb on + strand, within GFF412 at 424.476 kb on - strand, within GFF412 at 424.476 kb on - strand, within GFF412 at 424.476 kb on - strand, within GFF412 at 424.766 kb on + strand, within GFF412 at 424.766 kb on + strand, within GFF412 at 424.767 kb on - strand, within GFF412 at 424.865 kb on + strand at 424.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 423,401 + +0.6 423,401 + +0.3 423,401 + -0.6 423,401 + -1.9 423,402 - +1.5 423,434 + -1.5 423,435 - -1.3 423,435 - -0.0 424,011 - +1.1 424,011 - +0.1 424,148 + GFF412 0.22 +0.2 424,311 - GFF412 0.39 +0.6 424,475 + GFF412 0.56 -0.6 424,476 - GFF412 0.56 -0.8 424,476 - GFF412 0.56 -0.1 424,476 - GFF412 0.56 -0.1 424,766 + GFF412 0.87 +1.0 424,766 + GFF412 0.87 -0.1 424,767 - GFF412 0.87 -0.6 424,865 + +0.6 424,866 - -0.6
Or see this region's nucleotide sequence