Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4100 and GFF4101 overlap by 4 nucleotides GFF4101 and GFF4102 overlap by 14 nucleotides GFF4102 and GFF4103 overlap by 4 nucleotides GFF4103 and GFF4104 are separated by 99 nucleotides
GFF4100 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 93,289 to 94,005
GFF4100
GFF4101 - Lipopolysaccharide export system ATP-binding protein LptB, at 94,002 to 94,778
GFF4101
GFF4102 - hypothetical protein, at 94,765 to 95,745
GFF4102
GFF4103 - High-affinity branched-chain amino acid transport system permease protein LivH, at 95,742 to 96,614
GFF4103
GFF4104 - hypothetical protein, at 96,714 to 97,520
GFF4104
Position (kb) 94
95
96 Strain fitness (log2 ratio) -2
-1
0
1
2 at 93.789 kb on - strand, within GFF4100 at 93.789 kb on - strand, within GFF4100 at 93.969 kb on - strand at 94.041 kb on + strand at 94.072 kb on + strand at 94.072 kb on + strand at 94.073 kb on - strand at 94.073 kb on - strand at 94.622 kb on - strand, within GFF4101 at 94.622 kb on - strand, within GFF4101 at 94.622 kb on - strand, within GFF4101 at 94.622 kb on - strand, within GFF4101 at 94.988 kb on + strand, within GFF4102 at 94.988 kb on + strand, within GFF4102 at 94.988 kb on + strand, within GFF4102 at 94.988 kb on + strand, within GFF4102 at 94.989 kb on - strand, within GFF4102 at 94.989 kb on - strand, within GFF4102 at 94.989 kb on - strand, within GFF4102 at 94.989 kb on - strand, within GFF4102 at 94.989 kb on - strand, within GFF4102 at 95.249 kb on + strand, within GFF4102 at 95.249 kb on + strand, within GFF4102 at 95.387 kb on + strand, within GFF4102 at 95.388 kb on - strand, within GFF4102 at 95.510 kb on + strand, within GFF4102 at 95.552 kb on + strand, within GFF4102 at 95.576 kb on + strand, within GFF4102 at 95.600 kb on + strand, within GFF4102 at 95.601 kb on - strand, within GFF4102 at 95.601 kb on - strand, within GFF4102 at 95.601 kb on - strand, within GFF4102 at 95.601 kb on - strand, within GFF4102 at 95.601 kb on - strand, within GFF4102 at 95.634 kb on - strand, within GFF4102 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.056 kb on - strand, within GFF4103 at 96.247 kb on + strand, within GFF4103 at 96.248 kb on - strand, within GFF4103 at 96.470 kb on - strand, within GFF4103 at 96.470 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103 at 96.479 kb on - strand, within GFF4103
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 93,789 - GFF4100 0.70 -0.2 93,789 - GFF4100 0.70 -0.5 93,969 - -0.8 94,041 + -0.8 94,072 + +0.9 94,072 + -0.4 94,073 - +1.4 94,073 - +0.9 94,622 - GFF4101 0.80 +1.0 94,622 - GFF4101 0.80 -0.2 94,622 - GFF4101 0.80 +0.1 94,622 - GFF4101 0.80 +0.6 94,988 + GFF4102 0.23 -0.3 94,988 + GFF4102 0.23 +0.4 94,988 + GFF4102 0.23 -0.3 94,988 + GFF4102 0.23 -0.3 94,989 - GFF4102 0.23 -0.5 94,989 - GFF4102 0.23 -0.2 94,989 - GFF4102 0.23 -2.0 94,989 - GFF4102 0.23 -2.0 94,989 - GFF4102 0.23 +0.9 95,249 + GFF4102 0.49 +0.1 95,249 + GFF4102 0.49 +0.4 95,387 + GFF4102 0.63 +0.4 95,388 - GFF4102 0.64 -0.2 95,510 + GFF4102 0.76 +1.0 95,552 + GFF4102 0.80 -2.0 95,576 + GFF4102 0.83 +0.3 95,600 + GFF4102 0.85 +0.2 95,601 - GFF4102 0.85 +1.4 95,601 - GFF4102 0.85 +0.4 95,601 - GFF4102 0.85 -0.5 95,601 - GFF4102 0.85 -0.1 95,601 - GFF4102 0.85 +1.2 95,634 - GFF4102 0.89 +0.2 96,056 - GFF4103 0.36 +0.6 96,056 - GFF4103 0.36 +0.5 96,056 - GFF4103 0.36 -0.3 96,056 - GFF4103 0.36 -0.1 96,247 + GFF4103 0.58 -0.2 96,248 - GFF4103 0.58 -0.1 96,470 - GFF4103 0.83 +0.5 96,470 - GFF4103 0.83 +2.2 96,479 - GFF4103 0.84 -0.5 96,479 - GFF4103 0.84 -0.6 96,479 - GFF4103 0.84 +0.5 96,479 - GFF4103 0.84 +0.0
Or see this region's nucleotide sequence