Strain Fitness in Xanthobacter sp. DMC5 around GFF4099

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4098 and GFF4099 are separated by 48 nucleotidesGFF4099 and GFF4100 are separated by 33 nucleotidesGFF4100 and GFF4101 overlap by 4 nucleotides GFF4098 - Leucine-specific-binding protein, at 90,601 to 91,815 GFF4098 GFF4099 - L-hydantoinase, at 91,864 to 93,255 GFF4099 GFF4100 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 93,289 to 94,005 GFF4100 GFF4101 - Lipopolysaccharide export system ATP-binding protein LptB, at 94,002 to 94,778 GFF4101 Position (kb) 91 92 93 94Strain fitness (log2 ratio) -1 0 1 2at 90.867 kb on - strand, within GFF4098at 90.942 kb on + strand, within GFF4098at 90.943 kb on - strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.202 kb on + strand, within GFF4098at 91.203 kb on - strand, within GFF4098at 91.379 kb on + strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.397 kb on + strand, within GFF4098at 91.398 kb on - strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.487 kb on + strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.598 kb on + strand, within GFF4098at 91.650 kb on - strand, within GFF4098at 91.650 kb on - strand, within GFF4098at 91.856 kb on - strandat 92.055 kb on + strand, within GFF4099at 92.056 kb on - strand, within GFF4099at 92.056 kb on - strand, within GFF4099at 92.211 kb on - strand, within GFF4099at 92.211 kb on - strand, within GFF4099at 92.310 kb on + strand, within GFF4099at 92.311 kb on - strand, within GFF4099at 92.357 kb on + strand, within GFF4099at 92.357 kb on + strand, within GFF4099at 92.358 kb on - strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.459 kb on + strand, within GFF4099at 92.460 kb on - strand, within GFF4099at 92.460 kb on - strand, within GFF4099at 92.546 kb on + strand, within GFF4099at 92.549 kb on + strand, within GFF4099at 92.549 kb on + strand, within GFF4099at 92.578 kb on - strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.589 kb on - strand, within GFF4099at 92.594 kb on + strand, within GFF4099at 92.594 kb on + strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.619 kb on - strand, within GFF4099at 92.652 kb on - strand, within GFF4099at 92.652 kb on - strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.784 kb on - strand, within GFF4099at 92.784 kb on - strand, within GFF4099at 92.790 kb on - strand, within GFF4099at 92.790 kb on - strand, within GFF4099at 92.822 kb on + strand, within GFF4099at 92.886 kb on - strand, within GFF4099at 92.910 kb on + strand, within GFF4099at 92.939 kb on + strand, within GFF4099at 92.939 kb on + strand, within GFF4099at 93.044 kb on + strand, within GFF4099at 93.044 kb on + strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.045 kb on - strand, within GFF4099at 93.049 kb on - strand, within GFF4099at 93.049 kb on - strand, within GFF4099at 93.049 kb on - strand, within GFF4099at 93.305 kb on + strandat 93.383 kb on + strand, within GFF4100at 93.789 kb on - strand, within GFF4100at 93.789 kb on - strand, within GFF4100at 93.969 kb on - strandat 94.041 kb on + strandat 94.072 kb on + strandat 94.072 kb on + strandat 94.073 kb on - strandat 94.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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90,867 - GFF4098 0.22 -0.2
90,942 + GFF4098 0.28 -0.2
90,943 - GFF4098 0.28 -0.9
90,944 + GFF4098 0.28 -0.5
90,944 + GFF4098 0.28 -0.7
90,944 + GFF4098 0.28 +0.1
90,944 + GFF4098 0.28 +0.4
90,944 + GFF4098 0.28 +0.5
90,944 + GFF4098 0.28 -0.5
90,945 - GFF4098 0.28 +0.0
90,945 - GFF4098 0.28 -0.3
90,945 - GFF4098 0.28 -0.6
91,109 + GFF4098 0.42 +0.2
91,109 + GFF4098 0.42 -0.2
91,110 - GFF4098 0.42 -0.1
91,110 - GFF4098 0.42 +1.6
91,190 + GFF4098 0.48 -0.4
91,190 + GFF4098 0.48 +1.1
91,202 + GFF4098 0.49 +0.2
91,203 - GFF4098 0.50 -0.1
91,379 + GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 -0.6
91,380 - GFF4098 0.64 -1.1
91,380 - GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 +0.7
91,385 + GFF4098 0.65 +1.8
91,385 + GFF4098 0.65 -0.6
91,397 + GFF4098 0.66 +1.4
91,398 - GFF4098 0.66 +0.7
91,442 + GFF4098 0.69 +0.8
91,442 + GFF4098 0.69 +0.4
91,442 + GFF4098 0.69 -0.5
91,443 - GFF4098 0.69 +0.8
91,443 - GFF4098 0.69 +0.4
91,443 - GFF4098 0.69 -0.1
91,443 - GFF4098 0.69 -0.4
91,487 + GFF4098 0.73 -0.9
91,488 - GFF4098 0.73 +0.5
91,488 - GFF4098 0.73 +0.6
91,598 + GFF4098 0.82 -0.4
91,650 - GFF4098 0.86 +0.4
91,650 - GFF4098 0.86 -1.1
91,856 - +2.1
92,055 + GFF4099 0.14 +1.5
92,056 - GFF4099 0.14 -1.1
92,056 - GFF4099 0.14 -0.1
92,211 - GFF4099 0.25 +0.1
92,211 - GFF4099 0.25 +0.3
92,310 + GFF4099 0.32 +0.5
92,311 - GFF4099 0.32 -0.5
92,357 + GFF4099 0.35 -0.2
92,357 + GFF4099 0.35 +0.9
92,358 - GFF4099 0.35 -0.7
92,369 + GFF4099 0.36 -0.1
92,369 + GFF4099 0.36 +1.6
92,369 + GFF4099 0.36 -0.3
92,459 + GFF4099 0.43 +2.6
92,460 - GFF4099 0.43 -0.6
92,460 - GFF4099 0.43 +0.5
92,546 + GFF4099 0.49 +0.0
92,549 + GFF4099 0.49 +0.2
92,549 + GFF4099 0.49 +0.3
92,578 - GFF4099 0.51 +1.1
92,588 + GFF4099 0.52 -0.2
92,588 + GFF4099 0.52 -0.9
92,588 + GFF4099 0.52 -0.3
92,589 - GFF4099 0.52 -0.5
92,594 + GFF4099 0.52 -0.0
92,594 + GFF4099 0.52 +0.4
92,595 - GFF4099 0.53 +0.0
92,595 - GFF4099 0.53 -0.2
92,595 - GFF4099 0.53 -1.1
92,595 - GFF4099 0.53 +0.6
92,595 - GFF4099 0.53 +0.5
92,619 - GFF4099 0.54 -0.7
92,652 - GFF4099 0.57 +0.4
92,652 - GFF4099 0.57 -1.1
92,783 + GFF4099 0.66 +0.0
92,783 + GFF4099 0.66 +1.1
92,783 + GFF4099 0.66 +0.0
92,783 + GFF4099 0.66 +0.5
92,784 - GFF4099 0.66 +0.2
92,784 - GFF4099 0.66 +1.1
92,790 - GFF4099 0.67 -1.2
92,790 - GFF4099 0.67 -1.1
92,822 + GFF4099 0.69 +0.3
92,886 - GFF4099 0.73 -1.0
92,910 + GFF4099 0.75 -0.2
92,939 + GFF4099 0.77 +0.4
92,939 + GFF4099 0.77 +0.2
93,044 + GFF4099 0.85 +0.9
93,044 + GFF4099 0.85 -0.0
93,045 - GFF4099 0.85 +0.7
93,045 - GFF4099 0.85 +0.3
93,045 - GFF4099 0.85 -0.1
93,045 - GFF4099 0.85 -0.1
93,045 - GFF4099 0.85 -1.5
93,045 - GFF4099 0.85 +0.0
93,049 - GFF4099 0.85 +2.1
93,049 - GFF4099 0.85 +1.9
93,049 - GFF4099 0.85 +0.1
93,305 + -0.2
93,383 + GFF4100 0.13 +0.2
93,789 - GFF4100 0.70 -0.2
93,789 - GFF4100 0.70 -0.5
93,969 - -0.8
94,041 + -0.8
94,072 + +0.9
94,072 + -0.4
94,073 - +1.4
94,073 - +0.9

Or see this region's nucleotide sequence