Strain Fitness in Xanthobacter sp. DMC5 around GFF4098

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4097 and GFF4098 overlap by 4 nucleotidesGFF4098 and GFF4099 are separated by 48 nucleotides GFF4097 - hypothetical protein, at 89,624 to 90,604 GFF4097 GFF4098 - Leucine-specific-binding protein, at 90,601 to 91,815 GFF4098 GFF4099 - L-hydantoinase, at 91,864 to 93,255 GFF4099 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.625 kb on + strandat 89.833 kb on - strand, within GFF4097at 89.835 kb on + strand, within GFF4097at 89.835 kb on + strand, within GFF4097at 89.851 kb on - strand, within GFF4097at 89.901 kb on + strand, within GFF4097at 89.901 kb on + strand, within GFF4097at 89.902 kb on - strand, within GFF4097at 89.902 kb on - strand, within GFF4097at 89.916 kb on + strand, within GFF4097at 89.916 kb on + strand, within GFF4097at 89.917 kb on - strand, within GFF4097at 90.492 kb on + strand, within GFF4097at 90.623 kb on + strandat 90.624 kb on - strandat 90.731 kb on + strand, within GFF4098at 90.732 kb on - strand, within GFF4098at 90.732 kb on - strand, within GFF4098at 90.737 kb on - strand, within GFF4098at 90.753 kb on + strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.760 kb on - strand, within GFF4098at 90.867 kb on - strand, within GFF4098at 90.942 kb on + strand, within GFF4098at 90.943 kb on - strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.202 kb on + strand, within GFF4098at 91.203 kb on - strand, within GFF4098at 91.379 kb on + strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.397 kb on + strand, within GFF4098at 91.398 kb on - strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.487 kb on + strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.598 kb on + strand, within GFF4098at 91.650 kb on - strand, within GFF4098at 91.650 kb on - strand, within GFF4098at 91.856 kb on - strandat 92.055 kb on + strand, within GFF4099at 92.056 kb on - strand, within GFF4099at 92.056 kb on - strand, within GFF4099at 92.211 kb on - strand, within GFF4099at 92.211 kb on - strand, within GFF4099at 92.310 kb on + strand, within GFF4099at 92.311 kb on - strand, within GFF4099at 92.357 kb on + strand, within GFF4099at 92.357 kb on + strand, within GFF4099at 92.358 kb on - strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.369 kb on + strand, within GFF4099at 92.459 kb on + strand, within GFF4099at 92.460 kb on - strand, within GFF4099at 92.460 kb on - strand, within GFF4099at 92.546 kb on + strand, within GFF4099at 92.549 kb on + strand, within GFF4099at 92.549 kb on + strand, within GFF4099at 92.578 kb on - strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.588 kb on + strand, within GFF4099at 92.589 kb on - strand, within GFF4099at 92.594 kb on + strand, within GFF4099at 92.594 kb on + strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.595 kb on - strand, within GFF4099at 92.619 kb on - strand, within GFF4099at 92.652 kb on - strand, within GFF4099at 92.652 kb on - strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.783 kb on + strand, within GFF4099at 92.784 kb on - strand, within GFF4099at 92.784 kb on - strand, within GFF4099at 92.790 kb on - strand, within GFF4099at 92.790 kb on - strand, within GFF4099

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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89,625 + -2.7
89,833 - GFF4097 0.21 +0.3
89,835 + GFF4097 0.22 -0.6
89,835 + GFF4097 0.22 +0.1
89,851 - GFF4097 0.23 -1.6
89,901 + GFF4097 0.28 -0.7
89,901 + GFF4097 0.28 -2.3
89,902 - GFF4097 0.28 +0.1
89,902 - GFF4097 0.28 -0.7
89,916 + GFF4097 0.30 -0.1
89,916 + GFF4097 0.30 -2.1
89,917 - GFF4097 0.30 -1.6
90,492 + GFF4097 0.88 +1.8
90,623 + -0.5
90,624 - -0.7
90,731 + GFF4098 0.11 -0.1
90,732 - GFF4098 0.11 +0.5
90,732 - GFF4098 0.11 +0.8
90,737 - GFF4098 0.11 +0.9
90,753 + GFF4098 0.13 +2.1
90,754 - GFF4098 0.13 +0.8
90,754 - GFF4098 0.13 +0.9
90,754 - GFF4098 0.13 +0.5
90,760 - GFF4098 0.13 -0.3
90,867 - GFF4098 0.22 -0.2
90,942 + GFF4098 0.28 -0.2
90,943 - GFF4098 0.28 -0.9
90,944 + GFF4098 0.28 -0.5
90,944 + GFF4098 0.28 -0.7
90,944 + GFF4098 0.28 +0.1
90,944 + GFF4098 0.28 +0.4
90,944 + GFF4098 0.28 +0.5
90,944 + GFF4098 0.28 -0.5
90,945 - GFF4098 0.28 +0.0
90,945 - GFF4098 0.28 -0.3
90,945 - GFF4098 0.28 -0.6
91,109 + GFF4098 0.42 +0.2
91,109 + GFF4098 0.42 -0.2
91,110 - GFF4098 0.42 -0.1
91,110 - GFF4098 0.42 +1.6
91,190 + GFF4098 0.48 -0.4
91,190 + GFF4098 0.48 +1.1
91,202 + GFF4098 0.49 +0.2
91,203 - GFF4098 0.50 -0.1
91,379 + GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 -0.6
91,380 - GFF4098 0.64 -1.1
91,380 - GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 +0.7
91,385 + GFF4098 0.65 +1.8
91,385 + GFF4098 0.65 -0.6
91,397 + GFF4098 0.66 +1.4
91,398 - GFF4098 0.66 +0.7
91,442 + GFF4098 0.69 +0.8
91,442 + GFF4098 0.69 +0.4
91,442 + GFF4098 0.69 -0.5
91,443 - GFF4098 0.69 +0.8
91,443 - GFF4098 0.69 +0.4
91,443 - GFF4098 0.69 -0.1
91,443 - GFF4098 0.69 -0.4
91,487 + GFF4098 0.73 -0.9
91,488 - GFF4098 0.73 +0.5
91,488 - GFF4098 0.73 +0.6
91,598 + GFF4098 0.82 -0.4
91,650 - GFF4098 0.86 +0.4
91,650 - GFF4098 0.86 -1.1
91,856 - +2.1
92,055 + GFF4099 0.14 +1.5
92,056 - GFF4099 0.14 -1.1
92,056 - GFF4099 0.14 -0.1
92,211 - GFF4099 0.25 +0.1
92,211 - GFF4099 0.25 +0.3
92,310 + GFF4099 0.32 +0.5
92,311 - GFF4099 0.32 -0.5
92,357 + GFF4099 0.35 -0.2
92,357 + GFF4099 0.35 +0.9
92,358 - GFF4099 0.35 -0.7
92,369 + GFF4099 0.36 -0.1
92,369 + GFF4099 0.36 +1.6
92,369 + GFF4099 0.36 -0.3
92,459 + GFF4099 0.43 +2.6
92,460 - GFF4099 0.43 -0.6
92,460 - GFF4099 0.43 +0.5
92,546 + GFF4099 0.49 +0.0
92,549 + GFF4099 0.49 +0.2
92,549 + GFF4099 0.49 +0.3
92,578 - GFF4099 0.51 +1.1
92,588 + GFF4099 0.52 -0.2
92,588 + GFF4099 0.52 -0.9
92,588 + GFF4099 0.52 -0.3
92,589 - GFF4099 0.52 -0.5
92,594 + GFF4099 0.52 -0.0
92,594 + GFF4099 0.52 +0.4
92,595 - GFF4099 0.53 +0.0
92,595 - GFF4099 0.53 -0.2
92,595 - GFF4099 0.53 -1.1
92,595 - GFF4099 0.53 +0.6
92,595 - GFF4099 0.53 +0.5
92,619 - GFF4099 0.54 -0.7
92,652 - GFF4099 0.57 +0.4
92,652 - GFF4099 0.57 -1.1
92,783 + GFF4099 0.66 +0.0
92,783 + GFF4099 0.66 +1.1
92,783 + GFF4099 0.66 +0.0
92,783 + GFF4099 0.66 +0.5
92,784 - GFF4099 0.66 +0.2
92,784 - GFF4099 0.66 +1.1
92,790 - GFF4099 0.67 -1.2
92,790 - GFF4099 0.67 -1.1

Or see this region's nucleotide sequence