Strain Fitness in Xanthobacter sp. DMC5 around GFF4097

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4096 and GFF4097 are separated by 94 nucleotidesGFF4097 and GFF4098 overlap by 4 nucleotides GFF4096 - hypothetical protein, at 88,870 to 89,529 GFF4096 GFF4097 - hypothetical protein, at 89,624 to 90,604 GFF4097 GFF4098 - Leucine-specific-binding protein, at 90,601 to 91,815 GFF4098 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.739 kb on - strandat 88.931 kb on + strandat 88.931 kb on + strandat 88.931 kb on + strandat 88.932 kb on - strandat 88.932 kb on - strandat 88.932 kb on - strandat 88.964 kb on + strand, within GFF4096at 88.964 kb on + strand, within GFF4096at 88.964 kb on + strand, within GFF4096at 88.965 kb on - strand, within GFF4096at 88.965 kb on - strand, within GFF4096at 88.965 kb on - strand, within GFF4096at 89.076 kb on - strand, within GFF4096at 89.370 kb on + strand, within GFF4096at 89.370 kb on + strand, within GFF4096at 89.370 kb on + strand, within GFF4096at 89.371 kb on - strand, within GFF4096at 89.378 kb on - strand, within GFF4096at 89.514 kb on - strandat 89.576 kb on + strandat 89.598 kb on + strandat 89.598 kb on + strandat 89.625 kb on + strandat 89.833 kb on - strand, within GFF4097at 89.835 kb on + strand, within GFF4097at 89.835 kb on + strand, within GFF4097at 89.851 kb on - strand, within GFF4097at 89.901 kb on + strand, within GFF4097at 89.901 kb on + strand, within GFF4097at 89.902 kb on - strand, within GFF4097at 89.902 kb on - strand, within GFF4097at 89.916 kb on + strand, within GFF4097at 89.916 kb on + strand, within GFF4097at 89.917 kb on - strand, within GFF4097at 90.492 kb on + strand, within GFF4097at 90.623 kb on + strandat 90.624 kb on - strandat 90.731 kb on + strand, within GFF4098at 90.732 kb on - strand, within GFF4098at 90.732 kb on - strand, within GFF4098at 90.737 kb on - strand, within GFF4098at 90.753 kb on + strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.754 kb on - strand, within GFF4098at 90.760 kb on - strand, within GFF4098at 90.867 kb on - strand, within GFF4098at 90.942 kb on + strand, within GFF4098at 90.943 kb on - strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.944 kb on + strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 90.945 kb on - strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.109 kb on + strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.110 kb on - strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.190 kb on + strand, within GFF4098at 91.202 kb on + strand, within GFF4098at 91.203 kb on - strand, within GFF4098at 91.379 kb on + strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.380 kb on - strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.385 kb on + strand, within GFF4098at 91.397 kb on + strand, within GFF4098at 91.398 kb on - strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.442 kb on + strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.443 kb on - strand, within GFF4098at 91.487 kb on + strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.488 kb on - strand, within GFF4098at 91.598 kb on + strand, within GFF4098

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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88,739 - +0.8
88,931 + -0.5
88,931 + +0.3
88,931 + +0.2
88,932 - +0.5
88,932 - +0.1
88,932 - +0.6
88,964 + GFF4096 0.14 +1.1
88,964 + GFF4096 0.14 +0.9
88,964 + GFF4096 0.14 +0.5
88,965 - GFF4096 0.14 +0.1
88,965 - GFF4096 0.14 -0.1
88,965 - GFF4096 0.14 +1.0
89,076 - GFF4096 0.31 +0.1
89,370 + GFF4096 0.76 +0.0
89,370 + GFF4096 0.76 -1.6
89,370 + GFF4096 0.76 +0.2
89,371 - GFF4096 0.76 +0.2
89,378 - GFF4096 0.77 +1.0
89,514 - -0.1
89,576 + -1.9
89,598 + +0.9
89,598 + -0.2
89,625 + -2.7
89,833 - GFF4097 0.21 +0.3
89,835 + GFF4097 0.22 -0.6
89,835 + GFF4097 0.22 +0.1
89,851 - GFF4097 0.23 -1.6
89,901 + GFF4097 0.28 -0.7
89,901 + GFF4097 0.28 -2.3
89,902 - GFF4097 0.28 +0.1
89,902 - GFF4097 0.28 -0.7
89,916 + GFF4097 0.30 -0.1
89,916 + GFF4097 0.30 -2.1
89,917 - GFF4097 0.30 -1.6
90,492 + GFF4097 0.88 +1.8
90,623 + -0.5
90,624 - -0.7
90,731 + GFF4098 0.11 -0.1
90,732 - GFF4098 0.11 +0.5
90,732 - GFF4098 0.11 +0.8
90,737 - GFF4098 0.11 +0.9
90,753 + GFF4098 0.13 +2.1
90,754 - GFF4098 0.13 +0.8
90,754 - GFF4098 0.13 +0.9
90,754 - GFF4098 0.13 +0.5
90,760 - GFF4098 0.13 -0.3
90,867 - GFF4098 0.22 -0.2
90,942 + GFF4098 0.28 -0.2
90,943 - GFF4098 0.28 -0.9
90,944 + GFF4098 0.28 -0.5
90,944 + GFF4098 0.28 -0.7
90,944 + GFF4098 0.28 +0.1
90,944 + GFF4098 0.28 +0.4
90,944 + GFF4098 0.28 +0.5
90,944 + GFF4098 0.28 -0.5
90,945 - GFF4098 0.28 +0.0
90,945 - GFF4098 0.28 -0.3
90,945 - GFF4098 0.28 -0.6
91,109 + GFF4098 0.42 +0.2
91,109 + GFF4098 0.42 -0.2
91,110 - GFF4098 0.42 -0.1
91,110 - GFF4098 0.42 +1.6
91,190 + GFF4098 0.48 -0.4
91,190 + GFF4098 0.48 +1.1
91,202 + GFF4098 0.49 +0.2
91,203 - GFF4098 0.50 -0.1
91,379 + GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 -0.6
91,380 - GFF4098 0.64 -1.1
91,380 - GFF4098 0.64 +0.4
91,380 - GFF4098 0.64 +0.7
91,385 + GFF4098 0.65 +1.8
91,385 + GFF4098 0.65 -0.6
91,397 + GFF4098 0.66 +1.4
91,398 - GFF4098 0.66 +0.7
91,442 + GFF4098 0.69 +0.8
91,442 + GFF4098 0.69 +0.4
91,442 + GFF4098 0.69 -0.5
91,443 - GFF4098 0.69 +0.8
91,443 - GFF4098 0.69 +0.4
91,443 - GFF4098 0.69 -0.1
91,443 - GFF4098 0.69 -0.4
91,487 + GFF4098 0.73 -0.9
91,488 - GFF4098 0.73 +0.5
91,488 - GFF4098 0.73 +0.6
91,598 + GFF4098 0.82 -0.4

Or see this region's nucleotide sequence