Strain Fitness in Xanthobacter sp. DMC5 around GFF409

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF407 and GFF408 are separated by 32 nucleotidesGFF408 and GFF409 are separated by 21 nucleotidesGFF409 and GFF410 are separated by 216 nucleotidesGFF410 and GFF411 are separated by 345 nucleotides GFF407 - hypothetical protein, at 420,766 to 421,338 GFF407 GFF408 - Type-5 uracil-DNA glycosylase, at 421,371 to 422,033 GFF408 GFF409 - hypothetical protein, at 422,055 to 422,663 GFF409 GFF410 - DNA-directed RNA polymerase subunit omega, at 422,880 to 423,269 GFF410 GFF411 - hypothetical protein, at 423,615 to 423,932 GFF411 Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1at 421.267 kb on + strand, within GFF407at 421.267 kb on + strand, within GFF407at 422.495 kb on - strand, within GFF409at 422.525 kb on - strand, within GFF409at 423.401 kb on + strandat 423.401 kb on + strandat 423.401 kb on + strandat 423.401 kb on + strandat 423.402 kb on - strandat 423.434 kb on + strandat 423.435 kb on - strandat 423.435 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
421,267 + GFF407 0.87 -0.1
421,267 + GFF407 0.87 -0.8
422,495 - GFF409 0.72 -0.1
422,525 - GFF409 0.77 +1.2
423,401 + +0.6
423,401 + +0.3
423,401 + -0.6
423,401 + -1.9
423,402 - +1.5
423,434 + -1.5
423,435 - -1.3
423,435 - -0.0

Or see this region's nucleotide sequence