Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4078 and GFF4079 are separated by 8 nucleotides GFF4079 and GFF4080 are separated by 240 nucleotides
GFF4078 - (2R)-sulfolactate sulfo-lyase subunit beta, at 70,620 to 71,900
GFF4078
GFF4079 - Galactarate dehydratase (L-threo-forming), at 71,909 to 72,196
GFF4079
GFF4080 - 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)), at 72,437 to 73,432
GFF4080
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 70.951 kb on + strand, within GFF4078 at 70.951 kb on + strand, within GFF4078 at 70.951 kb on + strand, within GFF4078 at 70.951 kb on + strand, within GFF4078 at 70.951 kb on + strand, within GFF4078 at 70.952 kb on - strand, within GFF4078 at 70.952 kb on - strand, within GFF4078 at 70.952 kb on - strand, within GFF4078 at 70.954 kb on + strand, within GFF4078 at 70.955 kb on - strand, within GFF4078 at 71.005 kb on + strand, within GFF4078 at 71.006 kb on - strand, within GFF4078 at 71.147 kb on - strand, within GFF4078 at 71.254 kb on + strand, within GFF4078 at 71.254 kb on + strand, within GFF4078 at 71.255 kb on - strand, within GFF4078 at 71.281 kb on + strand, within GFF4078 at 71.281 kb on + strand, within GFF4078 at 71.281 kb on + strand, within GFF4078 at 71.281 kb on + strand, within GFF4078 at 71.281 kb on + strand, within GFF4078 at 71.282 kb on - strand, within GFF4078 at 71.282 kb on - strand, within GFF4078 at 71.422 kb on + strand, within GFF4078 at 71.422 kb on + strand, within GFF4078 at 71.423 kb on - strand, within GFF4078 at 71.423 kb on - strand, within GFF4078 at 71.423 kb on - strand, within GFF4078 at 71.519 kb on + strand, within GFF4078 at 71.520 kb on - strand, within GFF4078 at 71.520 kb on - strand, within GFF4078 at 71.635 kb on + strand, within GFF4078 at 71.635 kb on + strand, within GFF4078 at 71.788 kb on + strand at 71.788 kb on + strand at 71.994 kb on + strand, within GFF4079 at 72.597 kb on + strand, within GFF4080 at 72.597 kb on + strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.598 kb on - strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.603 kb on + strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.604 kb on - strand, within GFF4080 at 72.804 kb on + strand, within GFF4080 at 72.805 kb on - strand, within GFF4080 at 72.805 kb on - strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 72.999 kb on + strand, within GFF4080 at 73.000 kb on - strand, within GFF4080
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 70,951 + GFF4078 0.26 +0.7 70,951 + GFF4078 0.26 -0.2 70,951 + GFF4078 0.26 -1.0 70,951 + GFF4078 0.26 -0.2 70,951 + GFF4078 0.26 +0.2 70,952 - GFF4078 0.26 -1.6 70,952 - GFF4078 0.26 +0.4 70,952 - GFF4078 0.26 +0.7 70,954 + GFF4078 0.26 +0.5 70,955 - GFF4078 0.26 +1.4 71,005 + GFF4078 0.30 +0.4 71,006 - GFF4078 0.30 -0.6 71,147 - GFF4078 0.41 +0.3 71,254 + GFF4078 0.49 -0.1 71,254 + GFF4078 0.49 +0.3 71,255 - GFF4078 0.50 -0.6 71,281 + GFF4078 0.52 +0.4 71,281 + GFF4078 0.52 -0.6 71,281 + GFF4078 0.52 -0.2 71,281 + GFF4078 0.52 -1.0 71,281 + GFF4078 0.52 +0.5 71,282 - GFF4078 0.52 -0.4 71,282 - GFF4078 0.52 -0.5 71,422 + GFF4078 0.63 -0.3 71,422 + GFF4078 0.63 +0.4 71,423 - GFF4078 0.63 +0.3 71,423 - GFF4078 0.63 -0.5 71,423 - GFF4078 0.63 -0.5 71,519 + GFF4078 0.70 -0.6 71,520 - GFF4078 0.70 -0.6 71,520 - GFF4078 0.70 +1.2 71,635 + GFF4078 0.79 -1.5 71,635 + GFF4078 0.79 -0.8 71,788 + +0.2 71,788 + +0.4 71,994 + GFF4079 0.30 -1.5 72,597 + GFF4080 0.16 -0.3 72,597 + GFF4080 0.16 +0.0 72,598 - GFF4080 0.16 +0.6 72,598 - GFF4080 0.16 +0.8 72,598 - GFF4080 0.16 -0.5 72,598 - GFF4080 0.16 -0.3 72,603 + GFF4080 0.17 +0.1 72,603 + GFF4080 0.17 +0.1 72,603 + GFF4080 0.17 -0.2 72,604 - GFF4080 0.17 -0.0 72,604 - GFF4080 0.17 +0.8 72,604 - GFF4080 0.17 +0.5 72,804 + GFF4080 0.37 +0.2 72,805 - GFF4080 0.37 +0.2 72,805 - GFF4080 0.37 +0.1 72,999 + GFF4080 0.56 +0.2 72,999 + GFF4080 0.56 -0.1 72,999 + GFF4080 0.56 -2.3 73,000 - GFF4080 0.57 +0.1
Or see this region's nucleotide sequence