Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4074 and GFF4075 are separated by 355 nucleotides GFF4075 and GFF4076 are separated by 196 nucleotides
GFF4074 - Nitrate import ATP-binding protein NrtD, at 66,474 to 67,244
GFF4074
GFF4075 - HTH-type transcriptional repressor NagR, at 67,600 to 68,397
GFF4075
GFF4076 - (S)-sulfolactate dehydrogenase, at 68,594 to 69,529
GFF4076
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 66.628 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.835 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.874 kb on + strand, within GFF4074 at 66.875 kb on - strand, within GFF4074 at 66.875 kb on - strand, within GFF4074 at 67.067 kb on - strand, within GFF4074 at 67.067 kb on - strand, within GFF4074 at 67.162 kb on + strand, within GFF4074 at 67.163 kb on - strand, within GFF4074 at 67.280 kb on - strand at 67.491 kb on - strand at 67.592 kb on - strand at 67.682 kb on + strand, within GFF4075 at 67.823 kb on + strand, within GFF4075 at 67.824 kb on - strand, within GFF4075 at 67.831 kb on - strand, within GFF4075 at 67.831 kb on - strand, within GFF4075 at 67.950 kb on + strand, within GFF4075 at 68.172 kb on + strand, within GFF4075 at 68.172 kb on + strand, within GFF4075 at 68.173 kb on - strand, within GFF4075 at 68.440 kb on - strand at 68.441 kb on + strand at 68.441 kb on + strand at 68.442 kb on - strand at 68.442 kb on - strand at 68.442 kb on - strand at 68.524 kb on - strand at 68.566 kb on + strand at 68.567 kb on - strand at 68.569 kb on - strand at 68.669 kb on + strand at 68.825 kb on - strand, within GFF4076 at 68.827 kb on + strand, within GFF4076 at 68.906 kb on + strand, within GFF4076 at 68.906 kb on + strand, within GFF4076 at 68.906 kb on + strand, within GFF4076 at 68.907 kb on - strand, within GFF4076 at 68.907 kb on - strand, within GFF4076 at 68.907 kb on - strand, within GFF4076 at 68.911 kb on + strand, within GFF4076 at 68.912 kb on - strand, within GFF4076 at 68.912 kb on - strand, within GFF4076 at 68.946 kb on - strand, within GFF4076
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 66,628 + GFF4074 0.20 +0.6 66,835 + GFF4074 0.47 +0.5 66,835 + GFF4074 0.47 +0.0 66,835 + GFF4074 0.47 +1.0 66,874 + GFF4074 0.52 -1.0 66,874 + GFF4074 0.52 +0.0 66,874 + GFF4074 0.52 +1.1 66,874 + GFF4074 0.52 -0.1 66,875 - GFF4074 0.52 -1.0 66,875 - GFF4074 0.52 +0.8 67,067 - GFF4074 0.77 +0.7 67,067 - GFF4074 0.77 -1.2 67,162 + GFF4074 0.89 +2.4 67,163 - GFF4074 0.89 -0.8 67,280 - +0.8 67,491 - -1.5 67,592 - +0.5 67,682 + GFF4075 0.10 -1.3 67,823 + GFF4075 0.28 +1.0 67,824 - GFF4075 0.28 -0.3 67,831 - GFF4075 0.29 +0.5 67,831 - GFF4075 0.29 -1.6 67,950 + GFF4075 0.44 -0.9 68,172 + GFF4075 0.72 +0.2 68,172 + GFF4075 0.72 -0.3 68,173 - GFF4075 0.72 +1.5 68,440 - -0.1 68,441 + +0.0 68,441 + -0.6 68,442 - +0.5 68,442 - -0.1 68,442 - +0.4 68,524 - -2.4 68,566 + -1.0 68,567 - -1.0 68,569 - +0.5 68,669 + -1.0 68,825 - GFF4076 0.25 +0.9 68,827 + GFF4076 0.25 -0.5 68,906 + GFF4076 0.33 +0.9 68,906 + GFF4076 0.33 +0.0 68,906 + GFF4076 0.33 +0.9 68,907 - GFF4076 0.33 +0.8 68,907 - GFF4076 0.33 -0.3 68,907 - GFF4076 0.33 -2.8 68,911 + GFF4076 0.34 +0.1 68,912 - GFF4076 0.34 +1.3 68,912 - GFF4076 0.34 -0.9 68,946 - GFF4076 0.38 +0.7
Or see this region's nucleotide sequence