Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4071 and GFF4072 are separated by 227 nucleotides GFF4072 and GFF4073 are separated by 33 nucleotides GFF4073 and GFF4074 overlap by 8 nucleotides
GFF4071 - hypothetical protein, at 63,555 to 64,577
GFF4071
GFF4072 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 64,805 to 65,554
GFF4072
GFF4073 - hypothetical protein, at 65,588 to 66,481
GFF4073
GFF4074 - Nitrate import ATP-binding protein NrtD, at 66,474 to 67,244
GFF4074
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 63.900 kb on + strand, within GFF4071 at 63.901 kb on - strand, within GFF4071 at 63.901 kb on - strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.907 kb on + strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 63.908 kb on - strand, within GFF4071 at 64.204 kb on + strand, within GFF4071 at 64.204 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.444 kb on + strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.445 kb on - strand, within GFF4071 at 64.764 kb on - strand at 65.258 kb on + strand, within GFF4072 at 65.258 kb on + strand, within GFF4072 at 65.336 kb on + strand, within GFF4072 at 65.336 kb on + strand, within GFF4072 at 65.336 kb on + strand, within GFF4072 at 65.336 kb on + strand, within GFF4072 at 65.336 kb on + strand, within GFF4072 at 65.337 kb on - strand, within GFF4072 at 65.337 kb on - strand, within GFF4072 at 65.337 kb on - strand, within GFF4072 at 65.337 kb on - strand, within GFF4072 at 65.337 kb on - strand, within GFF4072 at 65.346 kb on - strand, within GFF4072 at 65.377 kb on + strand, within GFF4072 at 65.377 kb on + strand, within GFF4072 at 65.377 kb on + strand, within GFF4072 at 65.378 kb on - strand, within GFF4072 at 65.534 kb on + strand at 65.535 kb on - strand at 65.535 kb on - strand at 65.576 kb on + strand at 65.576 kb on + strand at 65.577 kb on - strand at 65.577 kb on - strand at 65.700 kb on + strand, within GFF4073 at 65.896 kb on - strand, within GFF4073 at 65.906 kb on + strand, within GFF4073 at 65.907 kb on - strand, within GFF4073 at 65.907 kb on - strand, within GFF4073 at 66.160 kb on - strand, within GFF4073 at 66.160 kb on - strand, within GFF4073 at 66.291 kb on + strand, within GFF4073 at 66.291 kb on + strand, within GFF4073 at 66.292 kb on - strand, within GFF4073 at 66.292 kb on - strand, within GFF4073 at 66.354 kb on + strand, within GFF4073
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 63,900 + GFF4071 0.34 +0.5 63,901 - GFF4071 0.34 -0.9 63,901 - GFF4071 0.34 -0.6 63,907 + GFF4071 0.34 -1.1 63,907 + GFF4071 0.34 -0.3 63,907 + GFF4071 0.34 +0.7 63,907 + GFF4071 0.34 -3.1 63,907 + GFF4071 0.34 +0.2 63,907 + GFF4071 0.34 -0.3 63,907 + GFF4071 0.34 +0.2 63,908 - GFF4071 0.35 +0.2 63,908 - GFF4071 0.35 -0.3 63,908 - GFF4071 0.35 -0.3 64,204 + GFF4071 0.63 -0.6 64,204 + GFF4071 0.63 -1.6 64,444 + GFF4071 0.87 -0.3 64,444 + GFF4071 0.87 -1.4 64,444 + GFF4071 0.87 +0.4 64,445 - GFF4071 0.87 +0.9 64,445 - GFF4071 0.87 -0.8 64,445 - GFF4071 0.87 +0.1 64,445 - GFF4071 0.87 +0.9 64,764 - +0.1 65,258 + GFF4072 0.60 +0.1 65,258 + GFF4072 0.60 +0.4 65,336 + GFF4072 0.71 -0.4 65,336 + GFF4072 0.71 +0.4 65,336 + GFF4072 0.71 +0.4 65,336 + GFF4072 0.71 -0.6 65,336 + GFF4072 0.71 +0.5 65,337 - GFF4072 0.71 -0.6 65,337 - GFF4072 0.71 +0.1 65,337 - GFF4072 0.71 -0.1 65,337 - GFF4072 0.71 -1.7 65,337 - GFF4072 0.71 +0.4 65,346 - GFF4072 0.72 -0.2 65,377 + GFF4072 0.76 -0.8 65,377 + GFF4072 0.76 +0.9 65,377 + GFF4072 0.76 +0.6 65,378 - GFF4072 0.76 -3.0 65,534 + +0.4 65,535 - -0.1 65,535 - +0.6 65,576 + +0.6 65,576 + +1.4 65,577 - +0.7 65,577 - +0.3 65,700 + GFF4073 0.13 -1.0 65,896 - GFF4073 0.34 +0.8 65,906 + GFF4073 0.36 -0.1 65,907 - GFF4073 0.36 +0.5 65,907 - GFF4073 0.36 +0.3 66,160 - GFF4073 0.64 -0.1 66,160 - GFF4073 0.64 +1.5 66,291 + GFF4073 0.79 +0.4 66,291 + GFF4073 0.79 +1.4 66,292 - GFF4073 0.79 -0.6 66,292 - GFF4073 0.79 +0.1 66,354 + GFF4073 0.86 +0.1
Or see this region's nucleotide sequence