Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4056 and GFF4057 are separated by 97 nucleotides GFF4057 and GFF4058 are separated by 96 nucleotides
GFF4056 - Adaptive-response sensory-kinase SasA, at 42,564 to 47,738
GFF4056
GFF4057 - Transcriptional regulator KdgR, at 47,836 to 48,759
GFF4057
GFF4058 - Alcohol dehydrogenase [acceptor], at 48,856 to 50,562
GFF4058
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 46.938 kb on + strand, within GFF4056 at 46.939 kb on - strand, within GFF4056 at 47.046 kb on + strand, within GFF4056 at 47.046 kb on + strand, within GFF4056 at 47.167 kb on + strand, within GFF4056 at 47.168 kb on - strand, within GFF4056 at 47.679 kb on + strand at 47.679 kb on + strand at 47.680 kb on - strand at 47.680 kb on - strand at 47.680 kb on - strand at 47.760 kb on + strand at 47.785 kb on + strand at 47.785 kb on + strand at 47.786 kb on - strand at 47.786 kb on - strand at 47.786 kb on - strand at 47.786 kb on - strand at 47.786 kb on - strand at 48.276 kb on - strand, within GFF4057 at 48.276 kb on - strand, within GFF4057 at 48.276 kb on - strand, within GFF4057 at 48.276 kb on - strand, within GFF4057 at 48.452 kb on + strand, within GFF4057 at 48.452 kb on + strand, within GFF4057 at 49.093 kb on + strand, within GFF4058 at 49.094 kb on - strand, within GFF4058 at 49.094 kb on - strand, within GFF4058 at 49.171 kb on + strand, within GFF4058 at 49.171 kb on + strand, within GFF4058 at 49.171 kb on + strand, within GFF4058 at 49.228 kb on + strand, within GFF4058 at 49.229 kb on - strand, within GFF4058 at 49.414 kb on + strand, within GFF4058 at 49.414 kb on + strand, within GFF4058 at 49.414 kb on + strand, within GFF4058 at 49.417 kb on + strand, within GFF4058 at 49.417 kb on + strand, within GFF4058 at 49.418 kb on - strand, within GFF4058 at 49.465 kb on + strand, within GFF4058 at 49.465 kb on + strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.466 kb on - strand, within GFF4058 at 49.683 kb on + strand, within GFF4058 at 49.683 kb on + strand, within GFF4058 at 49.684 kb on - strand, within GFF4058
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 46,938 + GFF4056 0.85 +0.2 46,939 - GFF4056 0.85 -1.2 47,046 + GFF4056 0.87 +0.0 47,046 + GFF4056 0.87 +0.3 47,167 + GFF4056 0.89 -1.2 47,168 - GFF4056 0.89 +0.5 47,679 + -0.7 47,679 + -1.0 47,680 - -0.5 47,680 - +0.1 47,680 - -0.1 47,760 + +0.4 47,785 + +0.1 47,785 + -0.2 47,786 - +0.4 47,786 - +0.7 47,786 - -0.4 47,786 - -1.4 47,786 - -0.2 48,276 - GFF4057 0.48 +0.5 48,276 - GFF4057 0.48 +0.3 48,276 - GFF4057 0.48 +0.4 48,276 - GFF4057 0.48 +0.9 48,452 + GFF4057 0.67 +0.2 48,452 + GFF4057 0.67 -0.8 49,093 + GFF4058 0.14 +0.1 49,094 - GFF4058 0.14 +1.0 49,094 - GFF4058 0.14 +1.6 49,171 + GFF4058 0.18 -1.3 49,171 + GFF4058 0.18 +0.3 49,171 + GFF4058 0.18 +1.2 49,228 + GFF4058 0.22 -0.0 49,229 - GFF4058 0.22 -0.0 49,414 + GFF4058 0.33 +0.8 49,414 + GFF4058 0.33 -1.8 49,414 + GFF4058 0.33 +1.1 49,417 + GFF4058 0.33 -1.0 49,417 + GFF4058 0.33 -0.3 49,418 - GFF4058 0.33 +0.4 49,465 + GFF4058 0.36 +0.9 49,465 + GFF4058 0.36 -0.0 49,466 - GFF4058 0.36 -0.1 49,466 - GFF4058 0.36 +0.0 49,466 - GFF4058 0.36 -0.7 49,466 - GFF4058 0.36 -0.4 49,466 - GFF4058 0.36 +0.0 49,466 - GFF4058 0.36 -0.4 49,683 + GFF4058 0.48 +0.5 49,683 + GFF4058 0.48 -0.5 49,684 - GFF4058 0.49 +2.4
Or see this region's nucleotide sequence