Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4054 and GFF4055 are separated by 2 nucleotides GFF4055 and GFF4056 are separated by 601 nucleotides
GFF4054 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 39,513 to 40,931
GFF4054
GFF4055 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 40,934 to 41,962
GFF4055
GFF4056 - Adaptive-response sensory-kinase SasA, at 42,564 to 47,738
GFF4056
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.002 kb on + strand, within GFF4054 at 40.002 kb on + strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.384 kb on + strand, within GFF4054 at 40.384 kb on + strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.386 kb on + strand, within GFF4054 at 40.386 kb on + strand, within GFF4054 at 40.557 kb on + strand, within GFF4054 at 40.560 kb on - strand, within GFF4054 at 40.668 kb on + strand, within GFF4054 at 40.669 kb on - strand, within GFF4054 at 40.752 kb on + strand, within GFF4054 at 40.752 kb on + strand, within GFF4054 at 40.753 kb on - strand, within GFF4054 at 40.753 kb on - strand, within GFF4054 at 40.753 kb on - strand, within GFF4054 at 40.753 kb on - strand, within GFF4054 at 40.906 kb on - strand at 41.006 kb on + strand at 41.007 kb on - strand at 41.174 kb on + strand, within GFF4055 at 41.174 kb on + strand, within GFF4055 at 41.175 kb on - strand, within GFF4055 at 41.177 kb on + strand, within GFF4055 at 41.177 kb on + strand, within GFF4055 at 41.177 kb on + strand, within GFF4055 at 41.177 kb on + strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.178 kb on - strand, within GFF4055 at 41.198 kb on + strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.199 kb on - strand, within GFF4055 at 41.457 kb on - strand, within GFF4055 at 41.786 kb on + strand, within GFF4055 at 41.787 kb on - strand, within GFF4055 at 41.892 kb on - strand at 41.906 kb on + strand at 41.907 kb on - strand at 41.907 kb on - strand at 42.128 kb on + strand at 42.129 kb on - strand at 42.366 kb on - strand at 42.366 kb on - strand at 42.387 kb on + strand at 42.531 kb on - strand at 42.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 40,002 + GFF4054 0.34 +1.1 40,002 + GFF4054 0.34 -0.3 40,003 - GFF4054 0.35 -0.1 40,003 - GFF4054 0.35 +0.1 40,003 - GFF4054 0.35 +1.4 40,003 - GFF4054 0.35 +0.5 40,003 - GFF4054 0.35 -1.0 40,003 - GFF4054 0.35 -0.2 40,003 - GFF4054 0.35 +1.2 40,384 + GFF4054 0.61 -1.9 40,384 + GFF4054 0.61 +0.3 40,385 - GFF4054 0.61 -1.3 40,385 - GFF4054 0.61 +1.1 40,385 - GFF4054 0.61 -0.5 40,386 + GFF4054 0.62 +0.8 40,386 + GFF4054 0.62 -0.8 40,557 + GFF4054 0.74 -1.0 40,560 - GFF4054 0.74 -0.5 40,668 + GFF4054 0.81 +0.6 40,669 - GFF4054 0.81 -0.9 40,752 + GFF4054 0.87 -0.2 40,752 + GFF4054 0.87 +0.6 40,753 - GFF4054 0.87 -1.8 40,753 - GFF4054 0.87 -0.7 40,753 - GFF4054 0.87 +0.5 40,753 - GFF4054 0.87 +0.6 40,906 - -1.3 41,006 + +0.5 41,007 - +0.9 41,174 + GFF4055 0.23 -0.7 41,174 + GFF4055 0.23 +0.4 41,175 - GFF4055 0.23 -2.6 41,177 + GFF4055 0.24 +0.4 41,177 + GFF4055 0.24 -0.1 41,177 + GFF4055 0.24 +0.0 41,177 + GFF4055 0.24 +0.0 41,178 - GFF4055 0.24 -0.7 41,178 - GFF4055 0.24 -0.9 41,178 - GFF4055 0.24 -0.8 41,178 - GFF4055 0.24 -0.6 41,178 - GFF4055 0.24 -0.6 41,178 - GFF4055 0.24 +0.1 41,178 - GFF4055 0.24 -0.5 41,198 + GFF4055 0.26 -0.3 41,199 - GFF4055 0.26 -0.8 41,199 - GFF4055 0.26 -2.3 41,199 - GFF4055 0.26 -1.9 41,199 - GFF4055 0.26 -0.9 41,199 - GFF4055 0.26 -0.2 41,199 - GFF4055 0.26 -1.2 41,199 - GFF4055 0.26 -0.1 41,199 - GFF4055 0.26 -1.5 41,457 - GFF4055 0.51 -1.1 41,786 + GFF4055 0.83 +0.8 41,787 - GFF4055 0.83 -0.4 41,892 - -0.5 41,906 + +2.4 41,907 - +0.2 41,907 - -0.1 42,128 + -0.6 42,129 - -0.4 42,366 - -1.7 42,366 - -1.7 42,387 + -0.0 42,531 - +0.2 42,537 - -0.7
Or see this region's nucleotide sequence