Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4050 and GFF4051 are separated by 22 nucleotides GFF4051 and GFF4052 overlap by 4 nucleotides GFF4052 and GFF4053 are separated by 273 nucleotides
GFF4050 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 33,790 to 35,814
GFF4050
GFF4051 - hypothetical protein, at 35,837 to 36,043
GFF4051
GFF4052 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 36,040 to 36,939
GFF4052
GFF4053 - Protein YdeP, at 37,213 to 39,510
GFF4053
Position (kb) 36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 35.263 kb on + strand, within GFF4050 at 35.275 kb on - strand, within GFF4050 at 35.338 kb on + strand, within GFF4050 at 35.813 kb on - strand at 35.993 kb on + strand, within GFF4051 at 35.993 kb on + strand, within GFF4051 at 35.993 kb on + strand, within GFF4051 at 35.994 kb on - strand, within GFF4051 at 36.027 kb on + strand at 36.027 kb on + strand at 36.028 kb on - strand at 36.028 kb on - strand at 36.107 kb on + strand at 36.108 kb on - strand at 36.163 kb on + strand, within GFF4052 at 36.164 kb on - strand, within GFF4052 at 36.164 kb on - strand, within GFF4052 at 36.164 kb on - strand, within GFF4052 at 36.164 kb on - strand, within GFF4052 at 36.205 kb on + strand, within GFF4052 at 36.205 kb on + strand, within GFF4052 at 36.317 kb on - strand, within GFF4052 at 36.481 kb on + strand, within GFF4052 at 36.482 kb on - strand, within GFF4052 at 36.559 kb on + strand, within GFF4052 at 36.559 kb on + strand, within GFF4052 at 36.560 kb on - strand, within GFF4052 at 36.560 kb on - strand, within GFF4052 at 36.593 kb on - strand, within GFF4052 at 36.722 kb on - strand, within GFF4052 at 36.937 kb on + strand at 36.937 kb on + strand at 36.938 kb on - strand at 36.988 kb on - strand at 37.058 kb on + strand at 37.059 kb on - strand at 37.071 kb on + strand at 37.086 kb on + strand at 37.087 kb on - strand at 37.129 kb on + strand at 37.130 kb on - strand at 37.240 kb on + strand at 37.488 kb on + strand, within GFF4053 at 37.489 kb on - strand, within GFF4053 at 37.520 kb on - strand, within GFF4053 at 37.561 kb on + strand, within GFF4053 at 37.561 kb on + strand, within GFF4053 at 37.583 kb on - strand, within GFF4053 at 37.667 kb on - strand, within GFF4053 at 37.667 kb on - strand, within GFF4053
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 35,263 + GFF4050 0.73 +0.1 35,275 - GFF4050 0.73 +0.2 35,338 + GFF4050 0.76 -0.1 35,813 - +2.6 35,993 + GFF4051 0.75 +1.0 35,993 + GFF4051 0.75 -0.9 35,993 + GFF4051 0.75 -0.3 35,994 - GFF4051 0.76 +0.7 36,027 + -0.4 36,027 + +0.4 36,028 - +0.1 36,028 - +1.1 36,107 + +0.3 36,108 - +0.8 36,163 + GFF4052 0.14 -0.0 36,164 - GFF4052 0.14 -0.3 36,164 - GFF4052 0.14 +0.1 36,164 - GFF4052 0.14 +0.1 36,164 - GFF4052 0.14 -0.2 36,205 + GFF4052 0.18 -1.3 36,205 + GFF4052 0.18 -0.6 36,317 - GFF4052 0.31 +1.2 36,481 + GFF4052 0.49 -1.9 36,482 - GFF4052 0.49 -0.3 36,559 + GFF4052 0.58 +0.5 36,559 + GFF4052 0.58 -1.3 36,560 - GFF4052 0.58 -0.1 36,560 - GFF4052 0.58 +0.6 36,593 - GFF4052 0.61 -2.0 36,722 - GFF4052 0.76 -0.8 36,937 + +0.8 36,937 + -0.5 36,938 - +0.7 36,988 - -0.5 37,058 + +0.5 37,059 - +0.6 37,071 + -0.2 37,086 + +1.4 37,087 - -0.5 37,129 + -0.5 37,130 - +0.3 37,240 + +0.2 37,488 + GFF4053 0.12 -0.7 37,489 - GFF4053 0.12 -0.6 37,520 - GFF4053 0.13 -0.6 37,561 + GFF4053 0.15 +0.9 37,561 + GFF4053 0.15 +1.5 37,583 - GFF4053 0.16 -0.3 37,667 - GFF4053 0.20 +0.5 37,667 - GFF4053 0.20 +0.2
Or see this region's nucleotide sequence