Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF404 and GFF405 are separated by 124 nucleotides GFF405 and GFF406 are separated by 13 nucleotides GFF406 and GFF407 overlap by 4 nucleotides
GFF404 - 4-hydroxy-tetrahydrodipicolinate synthase, at 418,851 to 419,750
GFF404
GFF405 - SsrA-binding protein, at 419,875 to 420,351
GFF405
GFF406 - Virulence protein, at 420,365 to 420,769
GFF406
GFF407 - hypothetical protein, at 420,766 to 421,338
GFF407
Position (kb) 419
420
421 Strain fitness (log2 ratio) -1
0
1 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.435 kb on - strand, within GFF406 at 420.435 kb on - strand, within GFF406 at 420.468 kb on + strand, within GFF406 at 420.468 kb on + strand, within GFF406 at 420.472 kb on + strand, within GFF406 at 420.473 kb on - strand, within GFF406 at 420.662 kb on - strand, within GFF406 at 420.698 kb on + strand, within GFF406 at 420.741 kb on - strand at 420.741 kb on - strand at 420.854 kb on + strand, within GFF407 at 420.855 kb on - strand, within GFF407 at 420.928 kb on + strand, within GFF407 at 420.929 kb on - strand, within GFF407 at 421.267 kb on + strand, within GFF407 at 421.267 kb on + strand, within GFF407
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 420,434 + GFF406 0.17 +0.7 420,434 + GFF406 0.17 -0.2 420,434 + GFF406 0.17 -0.8 420,434 + GFF406 0.17 +1.0 420,434 + GFF406 0.17 -0.5 420,434 + GFF406 0.17 -1.1 420,434 + GFF406 0.17 +0.3 420,435 - GFF406 0.17 +0.6 420,435 - GFF406 0.17 -0.1 420,468 + GFF406 0.25 -0.1 420,468 + GFF406 0.25 -1.6 420,472 + GFF406 0.26 -0.5 420,473 - GFF406 0.27 +1.7 420,662 - GFF406 0.73 +1.2 420,698 + GFF406 0.82 +0.1 420,741 - +1.0 420,741 - -0.5 420,854 + GFF407 0.15 -0.2 420,855 - GFF407 0.16 -1.0 420,928 + GFF407 0.28 -0.2 420,929 - GFF407 0.28 -0.4 421,267 + GFF407 0.87 -0.1 421,267 + GFF407 0.87 -0.8
Or see this region's nucleotide sequence