Strain Fitness in Xanthobacter sp. DMC5 around GFF4049

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4047 and GFF4048 are separated by 54 nucleotidesGFF4048 and GFF4049 are separated by 22 nucleotidesGFF4049 and GFF4050 are separated by 115 nucleotides GFF4047 - Nicotinate dehydrogenase subunit B, at 29,450 to 31,705 GFF4047 GFF4048 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 31,760 to 32,536 GFF4048 GFF4049 - 2,6-dihydroxypyridine 3-monooxygenase, at 32,559 to 33,674 GFF4049 GFF4050 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 33,790 to 35,814 GFF4050 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.997 kb on - strand, within GFF4048at 32.114 kb on + strand, within GFF4048at 32.180 kb on + strand, within GFF4048at 32.205 kb on - strand, within GFF4048at 32.456 kb on + strand, within GFF4048at 32.456 kb on + strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.457 kb on - strand, within GFF4048at 32.534 kb on + strandat 32.781 kb on + strand, within GFF4049at 32.890 kb on - strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.949 kb on + strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 32.950 kb on - strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.051 kb on + strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.052 kb on - strand, within GFF4049at 33.141 kb on + strand, within GFF4049at 33.172 kb on - strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.219 kb on + strand, within GFF4049at 33.244 kb on - strand, within GFF4049at 33.277 kb on - strand, within GFF4049at 33.431 kb on - strand, within GFF4049at 33.436 kb on - strand, within GFF4049at 33.600 kb on + strandat 33.600 kb on + strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.601 kb on - strandat 33.642 kb on + strandat 33.683 kb on + strandat 33.685 kb on + strandat 33.685 kb on + strandat 33.685 kb on + strandat 33.686 kb on - strandat 33.690 kb on - strandat 33.690 kb on - strandat 33.720 kb on - strandat 33.721 kb on + strandat 33.722 kb on - strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.747 kb on - strandat 33.926 kb on - strandat 33.926 kb on - strandat 33.934 kb on + strandat 33.934 kb on + strandat 33.934 kb on + strandat 34.099 kb on + strand, within GFF4050at 34.099 kb on + strand, within GFF4050at 34.099 kb on + strand, within GFF4050at 34.100 kb on - strand, within GFF4050at 34.100 kb on - strand, within GFF4050at 34.177 kb on + strand, within GFF4050at 34.212 kb on + strand, within GFF4050at 34.320 kb on + strand, within GFF4050at 34.368 kb on + strand, within GFF4050at 34.369 kb on - strand, within GFF4050at 34.501 kb on + strand, within GFF4050at 34.501 kb on + strand, within GFF4050at 34.501 kb on + strand, within GFF4050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
31,997 - GFF4048 0.31 -0.4
32,114 + GFF4048 0.46 -0.4
32,180 + GFF4048 0.54 -0.2
32,205 - GFF4048 0.57 +1.4
32,456 + GFF4048 0.90 -0.7
32,456 + GFF4048 0.90 -0.2
32,457 - GFF4048 0.90 -0.6
32,457 - GFF4048 0.90 -1.6
32,457 - GFF4048 0.90 -0.1
32,457 - GFF4048 0.90 -0.2
32,457 - GFF4048 0.90 -0.1
32,534 + -0.6
32,781 + GFF4049 0.20 -0.8
32,890 - GFF4049 0.30 +1.1
32,949 + GFF4049 0.35 -1.6
32,949 + GFF4049 0.35 -0.3
32,949 + GFF4049 0.35 +0.0
32,950 - GFF4049 0.35 -0.5
32,950 - GFF4049 0.35 -0.8
32,950 - GFF4049 0.35 -0.8
33,051 + GFF4049 0.44 +0.4
33,051 + GFF4049 0.44 -1.1
33,051 + GFF4049 0.44 +0.1
33,052 - GFF4049 0.44 +0.6
33,052 - GFF4049 0.44 -0.5
33,052 - GFF4049 0.44 -0.7
33,052 - GFF4049 0.44 -0.3
33,052 - GFF4049 0.44 +1.0
33,141 + GFF4049 0.52 +0.2
33,172 - GFF4049 0.55 +0.5
33,219 + GFF4049 0.59 +0.8
33,219 + GFF4049 0.59 -0.6
33,219 + GFF4049 0.59 +0.6
33,244 - GFF4049 0.61 -0.3
33,277 - GFF4049 0.64 -0.2
33,431 - GFF4049 0.78 -0.5
33,436 - GFF4049 0.79 +0.0
33,600 + -0.9
33,600 + -0.8
33,601 - +0.0
33,601 - -1.5
33,601 - -1.1
33,601 - -0.2
33,601 - +0.4
33,642 + -0.5
33,683 + -0.0
33,685 + +0.7
33,685 + +0.2
33,685 + +0.1
33,686 - -0.2
33,690 - +0.5
33,690 - +0.9
33,720 - +0.4
33,721 + +0.9
33,722 - +0.4
33,746 + +0.2
33,746 + +1.0
33,746 + -0.6
33,746 + -0.1
33,746 + +0.5
33,746 + -0.6
33,747 - -0.5
33,747 - +0.3
33,747 - -0.2
33,747 - +0.8
33,747 - +0.4
33,747 - -0.5
33,747 - -1.2
33,747 - +1.5
33,747 - +0.2
33,926 - -0.5
33,926 - +0.5
33,934 + +1.0
33,934 + -0.6
33,934 + -0.5
34,099 + GFF4050 0.15 -0.8
34,099 + GFF4050 0.15 -0.1
34,099 + GFF4050 0.15 +0.5
34,100 - GFF4050 0.15 -0.1
34,100 - GFF4050 0.15 -0.0
34,177 + GFF4050 0.19 +0.0
34,212 + GFF4050 0.21 -0.5
34,320 + GFF4050 0.26 -0.5
34,368 + GFF4050 0.29 -0.1
34,369 - GFF4050 0.29 -0.3
34,501 + GFF4050 0.35 +0.1
34,501 + GFF4050 0.35 +0.2
34,501 + GFF4050 0.35 -0.5

Or see this region's nucleotide sequence