Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF403 and GFF404 are separated by 372 nucleotides GFF404 and GFF405 are separated by 124 nucleotides GFF405 and GFF406 are separated by 13 nucleotides
GFF403 - Membrane-bound lytic murein transglycosylase C, at 416,181 to 418,478
GFF403
GFF404 - 4-hydroxy-tetrahydrodipicolinate synthase, at 418,851 to 419,750
GFF404
GFF405 - SsrA-binding protein, at 419,875 to 420,351
GFF405
GFF406 - Virulence protein, at 420,365 to 420,769
GFF406
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1 at 418.656 kb on + strand at 418.656 kb on + strand at 418.657 kb on - strand at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.434 kb on + strand, within GFF406 at 420.435 kb on - strand, within GFF406 at 420.435 kb on - strand, within GFF406 at 420.468 kb on + strand, within GFF406 at 420.468 kb on + strand, within GFF406 at 420.472 kb on + strand, within GFF406 at 420.473 kb on - strand, within GFF406 at 420.662 kb on - strand, within GFF406 at 420.698 kb on + strand, within GFF406 at 420.741 kb on - strand at 420.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 418,656 + +1.5 418,656 + -1.3 418,657 - +1.2 420,434 + GFF406 0.17 +0.7 420,434 + GFF406 0.17 -0.2 420,434 + GFF406 0.17 -0.8 420,434 + GFF406 0.17 +1.0 420,434 + GFF406 0.17 -0.5 420,434 + GFF406 0.17 -1.1 420,434 + GFF406 0.17 +0.3 420,435 - GFF406 0.17 +0.6 420,435 - GFF406 0.17 -0.1 420,468 + GFF406 0.25 -0.1 420,468 + GFF406 0.25 -1.6 420,472 + GFF406 0.26 -0.5 420,473 - GFF406 0.27 +1.7 420,662 - GFF406 0.73 +1.2 420,698 + GFF406 0.82 +0.1 420,741 - +1.0 420,741 - -0.5
Or see this region's nucleotide sequence