Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4035 and GFF4036 are separated by 105 nucleotides GFF4036 and GFF4037 are separated by 264 nucleotides GFF4037 and GFF4038 are separated by 179 nucleotides GFF4038 and GFF4039 are separated by 133 nucleotides
GFF4035 - Response regulator protein TmoT, at 18,563 to 19,165
GFF4035
GFF4036 - Response regulator protein TodT, at 19,271 to 19,651
GFF4036
GFF4037 - Metalloregulation DNA-binding stress protein, at 19,916 to 20,431
GFF4037
GFF4038 - hypothetical protein, at 20,611 to 20,898
GFF4038
GFF4039 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 21,032 to 22,672
GFF4039
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1
2 at 19.156 kb on + strand at 19.181 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.211 kb on - strand at 19.212 kb on + strand at 19.212 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.290 kb on + strand at 19.699 kb on + strand at 19.699 kb on + strand at 19.774 kb on - strand at 19.774 kb on - strand at 19.774 kb on - strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.823 kb on - strand at 19.903 kb on - strand at 20.030 kb on - strand, within GFF4037 at 20.243 kb on + strand, within GFF4037 at 20.244 kb on - strand, within GFF4037 at 20.244 kb on - strand, within GFF4037 at 20.244 kb on - strand, within GFF4037 at 20.244 kb on - strand, within GFF4037 at 20.537 kb on + strand at 20.883 kb on + strand at 20.884 kb on - strand at 20.980 kb on - strand at 20.999 kb on - strand at 21.026 kb on - strand at 21.258 kb on + strand, within GFF4039 at 21.259 kb on - strand, within GFF4039
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 19,156 + +0.2 19,181 + +0.6 19,210 + -0.6 19,210 + -1.6 19,210 + +0.9 19,210 + -0.1 19,210 + -1.1 19,211 - -0.6 19,212 + -0.6 19,212 + +1.2 19,214 + -0.2 19,214 + -1.0 19,214 + +0.5 19,214 + -0.8 19,214 + -0.7 19,290 + +0.3 19,699 + +0.4 19,699 + +1.1 19,774 - +0.1 19,774 - +1.0 19,774 - +0.1 19,822 + -1.2 19,822 + -1.4 19,823 - +0.5 19,903 - +0.2 20,030 - GFF4037 0.22 -0.5 20,243 + GFF4037 0.63 +0.1 20,244 - GFF4037 0.64 +1.2 20,244 - GFF4037 0.64 -1.4 20,244 - GFF4037 0.64 +0.6 20,244 - GFF4037 0.64 +0.5 20,537 + -0.3 20,883 + -0.3 20,884 - +0.5 20,980 - -1.5 20,999 - +0.1 21,026 - -0.5 21,258 + GFF4039 0.14 +1.9 21,259 - GFF4039 0.14 +0.1
Or see this region's nucleotide sequence