Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4034 and GFF4035 are separated by 47 nucleotides GFF4035 and GFF4036 are separated by 105 nucleotides GFF4036 and GFF4037 are separated by 264 nucleotides
GFF4034 - Adaptive-response sensory-kinase SasA, at 17,016 to 18,515
GFF4034
GFF4035 - Response regulator protein TmoT, at 18,563 to 19,165
GFF4035
GFF4036 - Response regulator protein TodT, at 19,271 to 19,651
GFF4036
GFF4037 - Metalloregulation DNA-binding stress protein, at 19,916 to 20,431
GFF4037
Position (kb) 18
19
20 Strain fitness (log2 ratio) -1
0
1 at 18.239 kb on + strand, within GFF4034 at 18.239 kb on + strand, within GFF4034 at 18.240 kb on - strand, within GFF4034 at 18.240 kb on - strand, within GFF4034 at 19.156 kb on + strand at 19.181 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.210 kb on + strand at 19.211 kb on - strand at 19.212 kb on + strand at 19.212 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.214 kb on + strand at 19.290 kb on + strand at 19.699 kb on + strand at 19.699 kb on + strand at 19.774 kb on - strand at 19.774 kb on - strand at 19.774 kb on - strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.823 kb on - strand at 19.903 kb on - strand at 20.030 kb on - strand, within GFF4037
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 18,239 + GFF4034 0.82 -0.3 18,239 + GFF4034 0.82 -1.1 18,240 - GFF4034 0.82 +0.5 18,240 - GFF4034 0.82 +0.4 19,156 + +0.2 19,181 + +0.6 19,210 + -0.6 19,210 + -1.6 19,210 + +0.9 19,210 + -0.1 19,210 + -1.1 19,211 - -0.6 19,212 + -0.6 19,212 + +1.2 19,214 + -0.2 19,214 + -1.0 19,214 + +0.5 19,214 + -0.8 19,214 + -0.7 19,290 + +0.3 19,699 + +0.4 19,699 + +1.1 19,774 - +0.1 19,774 - +1.0 19,774 - +0.1 19,822 + -1.2 19,822 + -1.4 19,823 - +0.5 19,903 - +0.2 20,030 - GFF4037 0.22 -0.5
Or see this region's nucleotide sequence