Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4028 and GFF4029 overlap by 4 nucleotides GFF4029 and GFF4030 overlap by 4 nucleotides GFF4030 and GFF4031 are separated by 27 nucleotides GFF4031 and GFF4032 are separated by 97 nucleotides
GFF4028 - 2,6-dihydroxypyridine 3-monooxygenase, at 11,656 to 12,933
GFF4028
GFF4029 - Inner membrane protein YjcH, at 12,930 to 13,286
GFF4029
GFF4030 - Cation/acetate symporter ActP, at 13,283 to 14,947
GFF4030
GFF4031 - hypothetical protein, at 14,975 to 15,391
GFF4031
GFF4032 - hypothetical protein, at 15,489 to 15,776
GFF4032
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.373 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.558 kb on + strand, within GFF4028 at 12.559 kb on - strand, within GFF4028 at 12.823 kb on + strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 12.824 kb on - strand at 13.086 kb on + strand, within GFF4029 at 13.086 kb on + strand, within GFF4029 at 13.087 kb on - strand, within GFF4029 at 13.095 kb on + strand, within GFF4029 at 13.096 kb on - strand, within GFF4029 at 13.096 kb on - strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.221 kb on + strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.222 kb on - strand, within GFF4029 at 13.285 kb on + strand at 13.415 kb on + strand at 13.496 kb on + strand, within GFF4030 at 13.497 kb on - strand, within GFF4030 at 13.497 kb on - strand, within GFF4030 at 13.557 kb on - strand, within GFF4030 at 13.557 kb on - strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.598 kb on + strand, within GFF4030 at 13.599 kb on - strand, within GFF4030 at 13.599 kb on - strand, within GFF4030 at 13.611 kb on - strand, within GFF4030 at 13.625 kb on + strand, within GFF4030 at 13.626 kb on - strand, within GFF4030 at 13.626 kb on - strand, within GFF4030 at 13.725 kb on - strand, within GFF4030 at 13.790 kb on + strand, within GFF4030 at 13.790 kb on + strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.791 kb on - strand, within GFF4030 at 13.850 kb on + strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.851 kb on - strand, within GFF4030 at 13.892 kb on + strand, within GFF4030 at 13.892 kb on + strand, within GFF4030 at 13.893 kb on - strand, within GFF4030 at 14.234 kb on + strand, within GFF4030 at 14.235 kb on - strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.471 kb on + strand, within GFF4030 at 14.798 kb on + strand at 14.820 kb on - strand at 14.824 kb on - strand at 14.980 kb on + strand at 14.980 kb on + strand at 14.980 kb on + strand at 14.981 kb on - strand at 14.981 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.000 kb on - strand at 15.176 kb on + strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.177 kb on - strand, within GFF4031 at 15.218 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.248 kb on + strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.249 kb on - strand, within GFF4031 at 15.336 kb on - strand, within GFF4031 at 15.559 kb on + strand, within GFF4032 at 15.559 kb on + strand, within GFF4032 at 15.560 kb on - strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.562 kb on + strand, within GFF4032 at 15.563 kb on - strand, within GFF4032 at 15.667 kb on + strand, within GFF4032 at 15.667 kb on + strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.668 kb on - strand, within GFF4032 at 15.761 kb on + strand at 15.762 kb on - strand at 15.762 kb on - strand at 15.815 kb on + strand at 15.832 kb on - strand at 15.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 12,373 + GFF4028 0.56 +0.8 12,558 + GFF4028 0.71 +0.3 12,558 + GFF4028 0.71 +1.3 12,558 + GFF4028 0.71 +0.1 12,559 - GFF4028 0.71 -0.6 12,823 + +0.0 12,824 - -0.3 12,824 - +0.2 12,824 - -2.0 12,824 - -1.1 12,824 - -0.7 12,824 - +0.9 13,086 + GFF4029 0.44 -0.5 13,086 + GFF4029 0.44 +0.4 13,087 - GFF4029 0.44 +1.2 13,095 + GFF4029 0.46 -0.5 13,096 - GFF4029 0.46 +1.4 13,096 - GFF4029 0.46 +1.2 13,221 + GFF4029 0.82 -0.2 13,221 + GFF4029 0.82 -1.5 13,221 + GFF4029 0.82 -1.0 13,221 + GFF4029 0.82 +0.4 13,221 + GFF4029 0.82 +1.1 13,221 + GFF4029 0.82 +0.3 13,221 + GFF4029 0.82 -0.1 13,221 + GFF4029 0.82 +0.6 13,221 + GFF4029 0.82 +1.2 13,222 - GFF4029 0.82 -0.0 13,222 - GFF4029 0.82 -0.6 13,222 - GFF4029 0.82 -0.5 13,285 + +0.3 13,415 + +0.0 13,496 + GFF4030 0.13 -1.2 13,497 - GFF4030 0.13 -0.1 13,497 - GFF4030 0.13 +0.4 13,557 - GFF4030 0.16 +0.5 13,557 - GFF4030 0.16 +1.0 13,598 + GFF4030 0.19 +0.4 13,598 + GFF4030 0.19 +0.8 13,598 + GFF4030 0.19 -2.1 13,598 + GFF4030 0.19 +1.1 13,598 + GFF4030 0.19 -0.3 13,598 + GFF4030 0.19 -0.5 13,599 - GFF4030 0.19 -0.1 13,599 - GFF4030 0.19 +0.5 13,611 - GFF4030 0.20 +0.1 13,625 + GFF4030 0.21 -0.5 13,626 - GFF4030 0.21 +0.1 13,626 - GFF4030 0.21 +0.2 13,725 - GFF4030 0.27 -0.1 13,790 + GFF4030 0.30 -0.2 13,790 + GFF4030 0.30 -0.5 13,791 - GFF4030 0.31 +0.8 13,791 - GFF4030 0.31 -0.3 13,791 - GFF4030 0.31 +0.8 13,791 - GFF4030 0.31 +0.1 13,850 + GFF4030 0.34 -0.3 13,851 - GFF4030 0.34 +1.4 13,851 - GFF4030 0.34 -0.1 13,851 - GFF4030 0.34 +0.8 13,851 - GFF4030 0.34 -1.0 13,892 + GFF4030 0.37 -1.7 13,892 + GFF4030 0.37 +0.2 13,893 - GFF4030 0.37 -0.6 14,234 + GFF4030 0.57 -0.7 14,235 - GFF4030 0.57 +1.4 14,471 + GFF4030 0.71 -0.6 14,471 + GFF4030 0.71 -0.5 14,471 + GFF4030 0.71 +0.1 14,798 + +0.0 14,820 - +0.5 14,824 - +0.0 14,980 + -0.3 14,980 + +1.1 14,980 + -0.9 14,981 - +0.2 14,981 - +0.4 15,000 - +0.1 15,000 - +0.3 15,000 - +0.1 15,000 - -0.5 15,176 + GFF4031 0.48 +0.4 15,177 - GFF4031 0.48 +0.5 15,177 - GFF4031 0.48 +0.4 15,177 - GFF4031 0.48 -0.9 15,218 + GFF4031 0.58 +1.0 15,248 + GFF4031 0.65 -0.3 15,248 + GFF4031 0.65 +0.1 15,248 + GFF4031 0.65 -0.1 15,249 - GFF4031 0.66 -1.3 15,249 - GFF4031 0.66 +0.5 15,249 - GFF4031 0.66 +0.3 15,249 - GFF4031 0.66 +1.0 15,249 - GFF4031 0.66 +0.5 15,249 - GFF4031 0.66 -0.0 15,336 - GFF4031 0.87 +0.4 15,559 + GFF4032 0.24 -0.3 15,559 + GFF4032 0.24 -0.6 15,560 - GFF4032 0.25 -1.0 15,562 + GFF4032 0.25 +0.3 15,562 + GFF4032 0.25 +0.4 15,562 + GFF4032 0.25 -0.5 15,562 + GFF4032 0.25 +0.1 15,563 - GFF4032 0.26 -0.3 15,667 + GFF4032 0.62 +1.5 15,667 + GFF4032 0.62 +0.2 15,668 - GFF4032 0.62 +0.0 15,668 - GFF4032 0.62 -0.5 15,668 - GFF4032 0.62 -0.4 15,761 + -0.1 15,762 - -0.6 15,762 - -0.5 15,815 + -0.0 15,832 - -0.2 15,835 - -0.8
Or see this region's nucleotide sequence