Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF400 and GFF401 overlap by 4 nucleotides GFF401 and GFF402 overlap by 4 nucleotides GFF402 and GFF403 are separated by 6 nucleotides GFF403 and GFF404 are separated by 372 nucleotides
GFF400 - Peptidoglycan-associated lipoprotein, at 413,225 to 415,441
GFF400
GFF401 - hypothetical protein, at 415,438 to 415,542
GFF401
GFF402 - hypothetical protein, at 415,539 to 416,174
GFF402
GFF403 - Membrane-bound lytic murein transglycosylase C, at 416,181 to 418,478
GFF403
GFF404 - 4-hydroxy-tetrahydrodipicolinate synthase, at 418,851 to 419,750
GFF404
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 415.444 kb on + strand at 415.444 kb on + strand at 415.468 kb on + strand, within GFF401 at 415.468 kb on + strand, within GFF401 at 415.468 kb on + strand, within GFF401 at 415.468 kb on + strand, within GFF401 at 415.469 kb on - strand, within GFF401 at 415.469 kb on - strand, within GFF401 at 415.603 kb on + strand, within GFF402 at 415.604 kb on - strand, within GFF402 at 416.077 kb on - strand, within GFF402 at 416.077 kb on - strand, within GFF402 at 416.133 kb on - strand at 416.230 kb on + strand at 418.656 kb on + strand at 418.656 kb on + strand at 418.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 415,444 + -1.5 415,444 + +0.3 415,468 + GFF401 0.29 +2.8 415,468 + GFF401 0.29 +0.4 415,468 + GFF401 0.29 -0.3 415,468 + GFF401 0.29 -1.0 415,469 - GFF401 0.30 +1.6 415,469 - GFF401 0.30 -1.9 415,603 + GFF402 0.10 +0.3 415,604 - GFF402 0.10 -1.3 416,077 - GFF402 0.85 -0.7 416,077 - GFF402 0.85 +0.7 416,133 - +0.7 416,230 + -1.7 418,656 + +1.5 418,656 + -1.3 418,657 - +1.2
Or see this region's nucleotide sequence