Strain Fitness in Xanthobacter sp. DMC5 around GFF4014

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4013 and GFF4014 are separated by 199 nucleotidesGFF4014 and GFF4015 overlap by 4 nucleotides GFF4013 - hypothetical protein, at 388,368 to 388,994 GFF4013 GFF4014 - Transcriptional regulatory protein OmpR, at 389,194 to 389,916 GFF4014 GFF4015 - Sensor histidine kinase RcsC, at 389,913 to 391,262 GFF4015 Position (kb) 389 390Strain fitness (log2 ratio) -1 0 1at 388.236 kb on + strandat 388.237 kb on - strandat 389.065 kb on - strandat 389.065 kb on - strandat 389.070 kb on + strandat 389.070 kb on + strandat 389.168 kb on + strandat 389.264 kb on - strandat 389.497 kb on + strand, within GFF4014at 389.497 kb on + strand, within GFF4014at 390.306 kb on - strand, within GFF4015at 390.900 kb on + strand, within GFF4015at 390.900 kb on + strand, within GFF4015at 390.901 kb on - strand, within GFF4015at 390.901 kb on - strand, within GFF4015

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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388,236 + -0.4
388,237 - +0.1
389,065 - +0.5
389,065 - -0.4
389,070 + -0.9
389,070 + -0.6
389,168 + +0.7
389,264 - +0.8
389,497 + GFF4014 0.42 -0.5
389,497 + GFF4014 0.42 +0.5
390,306 - GFF4015 0.29 -0.7
390,900 + GFF4015 0.73 -0.3
390,900 + GFF4015 0.73 -1.2
390,901 - GFF4015 0.73 +0.6
390,901 - GFF4015 0.73 +0.1

Or see this region's nucleotide sequence