Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4008 and GFF4009 overlap by 4 nucleotides GFF4009 and GFF4010 are separated by 9 nucleotides GFF4010 and GFF4011 are separated by 21 nucleotides
GFF4008 - Vitamin B12 import ATP-binding protein BtuD, at 383,412 to 384,452
GFF4008
GFF4009 - hypothetical protein, at 384,449 to 385,240
GFF4009
GFF4010 - Putative 2-aminoethylphosphonate transport system permease protein PhnU, at 385,250 to 386,068
GFF4010
GFF4011 - putative protein, at 386,090 to 387,115
GFF4011
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1 at 383.746 kb on + strand, within GFF4008 at 383.746 kb on + strand, within GFF4008 at 383.746 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.768 kb on - strand, within GFF4008 at 383.768 kb on - strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.867 kb on - strand, within GFF4008 at 383.867 kb on - strand, within GFF4008 at 384.182 kb on - strand, within GFF4008 at 384.531 kb on + strand, within GFF4009 at 384.532 kb on - strand, within GFF4009 at 384.532 kb on - strand, within GFF4009 at 384.564 kb on + strand, within GFF4009 at 384.564 kb on + strand, within GFF4009 at 384.565 kb on - strand, within GFF4009 at 384.565 kb on - strand, within GFF4009 at 384.769 kb on - strand, within GFF4009 at 384.819 kb on + strand, within GFF4009 at 384.820 kb on - strand, within GFF4009 at 384.879 kb on + strand, within GFF4009 at 385.378 kb on + strand, within GFF4010 at 385.378 kb on + strand, within GFF4010 at 385.379 kb on - strand, within GFF4010 at 385.379 kb on - strand, within GFF4010 at 385.380 kb on + strand, within GFF4010 at 385.381 kb on - strand, within GFF4010 at 385.381 kb on - strand, within GFF4010 at 385.623 kb on + strand, within GFF4010 at 385.623 kb on + strand, within GFF4010 at 385.624 kb on - strand, within GFF4010 at 385.624 kb on - strand, within GFF4010 at 385.624 kb on - strand, within GFF4010 at 385.624 kb on - strand, within GFF4010 at 385.624 kb on - strand, within GFF4010 at 385.629 kb on + strand, within GFF4010 at 385.629 kb on + strand, within GFF4010 at 385.629 kb on + strand, within GFF4010 at 385.629 kb on + strand, within GFF4010 at 385.912 kb on - strand, within GFF4010 at 385.938 kb on + strand, within GFF4010 at 385.939 kb on - strand, within GFF4010 at 385.939 kb on - strand, within GFF4010 at 386.109 kb on + strand at 386.151 kb on + strand at 386.151 kb on + strand at 386.152 kb on - strand at 386.152 kb on - strand at 386.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 383,746 + GFF4008 0.32 -0.3 383,746 + GFF4008 0.32 +0.6 383,746 + GFF4008 0.32 +0.5 383,767 + GFF4008 0.34 -0.5 383,767 + GFF4008 0.34 +0.3 383,767 + GFF4008 0.34 +1.1 383,767 + GFF4008 0.34 -0.4 383,768 - GFF4008 0.34 +0.8 383,768 - GFF4008 0.34 -0.3 383,866 + GFF4008 0.44 +0.9 383,866 + GFF4008 0.44 +0.0 383,866 + GFF4008 0.44 +0.3 383,867 - GFF4008 0.44 -1.0 383,867 - GFF4008 0.44 +0.5 384,182 - GFF4008 0.74 +0.2 384,531 + GFF4009 0.10 +0.2 384,532 - GFF4009 0.10 -0.3 384,532 - GFF4009 0.10 -0.5 384,564 + GFF4009 0.15 -2.0 384,564 + GFF4009 0.15 -1.1 384,565 - GFF4009 0.15 +1.0 384,565 - GFF4009 0.15 +0.1 384,769 - GFF4009 0.40 -0.3 384,819 + GFF4009 0.47 +0.5 384,820 - GFF4009 0.47 -0.7 384,879 + GFF4009 0.54 +1.4 385,378 + GFF4010 0.16 +0.6 385,378 + GFF4010 0.16 -0.2 385,379 - GFF4010 0.16 +0.5 385,379 - GFF4010 0.16 -0.4 385,380 + GFF4010 0.16 +0.4 385,381 - GFF4010 0.16 -0.3 385,381 - GFF4010 0.16 +0.0 385,623 + GFF4010 0.46 +0.1 385,623 + GFF4010 0.46 -1.6 385,624 - GFF4010 0.46 +0.3 385,624 - GFF4010 0.46 +0.0 385,624 - GFF4010 0.46 -0.0 385,624 - GFF4010 0.46 +1.0 385,624 - GFF4010 0.46 -1.0 385,629 + GFF4010 0.46 -0.5 385,629 + GFF4010 0.46 +0.7 385,629 + GFF4010 0.46 -0.7 385,629 + GFF4010 0.46 -0.0 385,912 - GFF4010 0.81 +0.5 385,938 + GFF4010 0.84 +1.2 385,939 - GFF4010 0.84 +1.5 385,939 - GFF4010 0.84 +0.6 386,109 + -0.3 386,151 + +1.1 386,151 + +1.2 386,152 - +0.5 386,152 - -0.3 386,175 + +0.1
Or see this region's nucleotide sequence