Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4005 and GFF4006 are separated by 828 nucleotides GFF4006 and GFF4007 are separated by 58 nucleotides GFF4007 and GFF4008 are separated by 3 nucleotides
GFF4005 - Lysine/ornithine decarboxylase, at 379,283 to 380,413
GFF4005
GFF4006 - 5-aminolevulinate synthase, at 381,242 to 382,525
GFF4006
GFF4007 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 382,584 to 383,408
GFF4007
GFF4008 - Vitamin B12 import ATP-binding protein BtuD, at 383,412 to 384,452
GFF4008
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2 at 380.284 kb on - strand, within GFF4005 at 380.284 kb on - strand, within GFF4005 at 380.325 kb on + strand at 380.325 kb on + strand at 380.326 kb on - strand at 380.326 kb on - strand at 380.326 kb on - strand at 380.418 kb on - strand at 380.552 kb on + strand at 380.573 kb on - strand at 380.697 kb on + strand at 380.698 kb on - strand at 380.708 kb on + strand at 380.711 kb on + strand at 380.711 kb on + strand at 380.755 kb on - strand at 380.862 kb on + strand at 381.060 kb on - strand at 381.060 kb on - strand at 381.164 kb on - strand at 381.185 kb on + strand at 381.185 kb on + strand at 381.193 kb on + strand at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 383.044 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 380,284 - GFF4005 0.89 -1.0 380,284 - GFF4005 0.89 +0.2 380,325 + +0.5 380,325 + +0.4 380,326 - +0.5 380,326 - -0.3 380,326 - -0.2 380,418 - +0.0 380,552 + -0.9 380,573 - -0.3 380,697 + +0.2 380,698 - +0.7 380,708 + +0.3 380,711 + +0.1 380,711 + +0.5 380,755 - -0.8 380,862 + -0.4 381,060 - +0.2 381,060 - +0.5 381,164 - -0.6 381,185 + +1.0 381,185 + -0.9 381,193 + +1.8 382,439 + -1.5 382,440 - +1.5 382,440 - -0.5 382,440 - -0.1 383,044 + GFF4007 0.56 +1.0 383,095 + GFF4007 0.62 -0.6 383,095 + GFF4007 0.62 +0.5 383,095 + GFF4007 0.62 +0.8 383,425 + -0.2
Or see this region's nucleotide sequence