Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4002 and GFF4003 are separated by 36 nucleotides GFF4003 and GFF4004 are separated by 83 nucleotides GFF4004 and GFF4005 are separated by 271 nucleotides
GFF4002 - Homospermidine synthase, at 376,544 to 377,974
GFF4002
GFF4003 - hypothetical protein, at 378,011 to 378,373
GFF4003
GFF4004 - hypothetical protein, at 378,457 to 379,011
GFF4004
GFF4005 - Lysine/ornithine decarboxylase, at 379,283 to 380,413
GFF4005
Position (kb) 378
379
380 Strain fitness (log2 ratio) -1
0
1
2 at 377.457 kb on - strand, within GFF4002 at 377.507 kb on + strand, within GFF4002 at 377.508 kb on - strand, within GFF4002 at 377.508 kb on - strand, within GFF4002 at 377.513 kb on + strand, within GFF4002 at 377.513 kb on + strand, within GFF4002 at 377.645 kb on + strand, within GFF4002 at 377.646 kb on - strand, within GFF4002 at 377.666 kb on + strand, within GFF4002 at 377.876 kb on + strand at 377.876 kb on + strand at 377.876 kb on + strand at 377.877 kb on - strand at 377.879 kb on - strand at 377.879 kb on - strand at 377.879 kb on - strand at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 379.077 kb on + strand at 379.078 kb on - strand at 379.078 kb on - strand at 379.197 kb on - strand at 379.293 kb on + strand at 379.294 kb on - strand at 379.294 kb on - strand at 379.336 kb on - strand at 379.347 kb on + strand at 379.348 kb on - strand at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.422 kb on + strand, within GFF4005 at 379.423 kb on - strand, within GFF4005 at 379.423 kb on - strand, within GFF4005 at 379.563 kb on + strand, within GFF4005 at 379.563 kb on + strand, within GFF4005 at 379.564 kb on - strand, within GFF4005 at 379.726 kb on - strand, within GFF4005
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 377,457 - GFF4002 0.64 +0.0 377,507 + GFF4002 0.67 +0.7 377,508 - GFF4002 0.67 +0.5 377,508 - GFF4002 0.67 +0.2 377,513 + GFF4002 0.68 +1.2 377,513 + GFF4002 0.68 +0.2 377,645 + GFF4002 0.77 +0.8 377,646 - GFF4002 0.77 +2.2 377,666 + GFF4002 0.78 +1.0 377,876 + -0.1 377,876 + +0.2 377,876 + +0.0 377,877 - -1.0 377,879 - -0.3 377,879 - +0.2 377,879 - +1.2 378,600 - GFF4004 0.26 -0.4 378,600 - GFF4004 0.26 +0.2 378,600 - GFF4004 0.26 +1.8 378,656 + GFF4004 0.36 -0.3 378,656 + GFF4004 0.36 +0.1 378,656 + GFF4004 0.36 +1.9 379,077 + +0.2 379,078 - +1.0 379,078 - +1.0 379,197 - -0.5 379,293 + +0.5 379,294 - -0.1 379,294 - +0.9 379,336 - -0.2 379,347 + -0.8 379,348 - +0.5 379,422 + GFF4005 0.12 +0.9 379,422 + GFF4005 0.12 +1.2 379,422 + GFF4005 0.12 -1.0 379,422 + GFF4005 0.12 -0.8 379,423 - GFF4005 0.12 +0.1 379,423 - GFF4005 0.12 -0.3 379,563 + GFF4005 0.25 +1.0 379,563 + GFF4005 0.25 -0.6 379,564 - GFF4005 0.25 -0.0 379,726 - GFF4005 0.39 +1.0
Or see this region's nucleotide sequence