Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4001 and GFF4002 are separated by 249 nucleotides GFF4002 and GFF4003 are separated by 36 nucleotides GFF4003 and GFF4004 are separated by 83 nucleotides
GFF4001 - Enterobactin exporter EntS, at 375,077 to 376,294
GFF4001
GFF4002 - Homospermidine synthase, at 376,544 to 377,974
GFF4002
GFF4003 - hypothetical protein, at 378,011 to 378,373
GFF4003
GFF4004 - hypothetical protein, at 378,457 to 379,011
GFF4004
Position (kb) 376
377
378 Strain fitness (log2 ratio) -1
0
1
2 at 375.554 kb on + strand, within GFF4001 at 375.554 kb on + strand, within GFF4001 at 375.599 kb on + strand, within GFF4001 at 375.600 kb on - strand, within GFF4001 at 375.600 kb on - strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.788 kb on + strand, within GFF4001 at 375.789 kb on - strand, within GFF4001 at 375.789 kb on - strand, within GFF4001 at 376.440 kb on + strand at 376.754 kb on + strand, within GFF4002 at 376.875 kb on - strand, within GFF4002 at 376.875 kb on - strand, within GFF4002 at 376.910 kb on + strand, within GFF4002 at 376.910 kb on + strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.911 kb on - strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.949 kb on + strand, within GFF4002 at 376.950 kb on - strand, within GFF4002 at 376.950 kb on - strand, within GFF4002 at 377.348 kb on + strand, within GFF4002 at 377.349 kb on - strand, within GFF4002 at 377.349 kb on - strand, within GFF4002 at 377.456 kb on + strand, within GFF4002 at 377.457 kb on - strand, within GFF4002 at 377.507 kb on + strand, within GFF4002 at 377.508 kb on - strand, within GFF4002 at 377.508 kb on - strand, within GFF4002 at 377.513 kb on + strand, within GFF4002 at 377.513 kb on + strand, within GFF4002 at 377.645 kb on + strand, within GFF4002 at 377.646 kb on - strand, within GFF4002 at 377.666 kb on + strand, within GFF4002 at 377.876 kb on + strand at 377.876 kb on + strand at 377.876 kb on + strand at 377.877 kb on - strand at 377.879 kb on - strand at 377.879 kb on - strand at 377.879 kb on - strand at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.600 kb on - strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004 at 378.656 kb on + strand, within GFF4004
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 375,554 + GFF4001 0.39 -0.3 375,554 + GFF4001 0.39 +0.6 375,599 + GFF4001 0.43 +0.0 375,600 - GFF4001 0.43 +0.7 375,600 - GFF4001 0.43 +0.3 375,788 + GFF4001 0.58 +1.2 375,788 + GFF4001 0.58 -0.4 375,788 + GFF4001 0.58 +0.9 375,788 + GFF4001 0.58 -0.2 375,788 + GFF4001 0.58 -0.8 375,789 - GFF4001 0.58 -0.5 375,789 - GFF4001 0.58 +0.7 376,440 + -0.9 376,754 + GFF4002 0.15 -0.2 376,875 - GFF4002 0.23 +0.0 376,875 - GFF4002 0.23 -0.9 376,910 + GFF4002 0.26 +0.1 376,910 + GFF4002 0.26 +2.5 376,911 - GFF4002 0.26 +1.2 376,911 - GFF4002 0.26 +0.4 376,911 - GFF4002 0.26 +1.4 376,911 - GFF4002 0.26 +0.5 376,949 + GFF4002 0.28 -0.3 376,949 + GFF4002 0.28 +0.9 376,949 + GFF4002 0.28 +0.9 376,950 - GFF4002 0.28 +1.2 376,950 - GFF4002 0.28 +1.3 377,348 + GFF4002 0.56 +0.2 377,349 - GFF4002 0.56 +0.7 377,349 - GFF4002 0.56 +0.5 377,456 + GFF4002 0.64 +0.6 377,457 - GFF4002 0.64 +0.0 377,507 + GFF4002 0.67 +0.7 377,508 - GFF4002 0.67 +0.5 377,508 - GFF4002 0.67 +0.2 377,513 + GFF4002 0.68 +1.2 377,513 + GFF4002 0.68 +0.2 377,645 + GFF4002 0.77 +0.8 377,646 - GFF4002 0.77 +2.2 377,666 + GFF4002 0.78 +1.0 377,876 + -0.1 377,876 + +0.2 377,876 + +0.0 377,877 - -1.0 377,879 - -0.3 377,879 - +0.2 377,879 - +1.2 378,600 - GFF4004 0.26 -0.4 378,600 - GFF4004 0.26 +0.2 378,600 - GFF4004 0.26 +1.8 378,656 + GFF4004 0.36 -0.3 378,656 + GFF4004 0.36 +0.1 378,656 + GFF4004 0.36 +1.9
Or see this region's nucleotide sequence