Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF38 and GFF39 are separated by 11 nucleotides GFF39 and GFF40 overlap by 4 nucleotides GFF40 and GFF41 are separated by 8 nucleotides
GFF38 - Inner membrane ABC transporter permease protein YdcV, at 47,283 to 48,077
GFF38
GFF39 - Spermidine/putrescine transport system permease protein PotB, at 48,089 to 48,964
GFF39
GFF40 - Vitamin B12 import ATP-binding protein BtuD, at 48,961 to 50,055
GFF40
GFF41 - putative protein, at 50,064 to 51,110
GFF41
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.994 kb on + strand, within GFF38 at 48.030 kb on - strand at 48.118 kb on - strand at 48.207 kb on + strand, within GFF39 at 48.207 kb on + strand, within GFF39 at 48.208 kb on - strand, within GFF39 at 48.438 kb on + strand, within GFF39 at 48.439 kb on - strand, within GFF39 at 48.439 kb on - strand, within GFF39 at 48.439 kb on - strand, within GFF39 at 48.573 kb on + strand, within GFF39 at 48.573 kb on + strand, within GFF39 at 48.787 kb on - strand, within GFF39 at 48.975 kb on - strand at 49.094 kb on + strand, within GFF40 at 49.346 kb on + strand, within GFF40 at 49.346 kb on + strand, within GFF40 at 49.347 kb on - strand, within GFF40 at 49.760 kb on + strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.761 kb on - strand, within GFF40 at 49.793 kb on + strand, within GFF40 at 49.794 kb on - strand, within GFF40 at 49.833 kb on + strand, within GFF40 at 49.974 kb on - strand at 50.228 kb on - strand, within GFF41 at 50.275 kb on + strand, within GFF41 at 50.275 kb on + strand, within GFF41 at 50.275 kb on + strand, within GFF41 at 50.275 kb on + strand, within GFF41 at 50.276 kb on - strand, within GFF41 at 50.276 kb on - strand, within GFF41 at 50.422 kb on + strand, within GFF41 at 50.465 kb on - strand, within GFF41 at 50.465 kb on - strand, within GFF41 at 50.465 kb on - strand, within GFF41 at 50.548 kb on + strand, within GFF41 at 50.548 kb on + strand, within GFF41 at 50.639 kb on - strand, within GFF41 at 50.699 kb on - strand, within GFF41 at 50.765 kb on - strand, within GFF41 at 50.989 kb on + strand, within GFF41
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 47,994 + GFF38 0.89 +0.6 48,030 - -1.2 48,118 - +0.4 48,207 + GFF39 0.13 -2.5 48,207 + GFF39 0.13 -1.1 48,208 - GFF39 0.14 -0.6 48,438 + GFF39 0.40 -1.0 48,439 - GFF39 0.40 +0.2 48,439 - GFF39 0.40 -0.4 48,439 - GFF39 0.40 -0.4 48,573 + GFF39 0.55 -0.5 48,573 + GFF39 0.55 -0.5 48,787 - GFF39 0.80 -0.8 48,975 - -0.3 49,094 + GFF40 0.12 +0.2 49,346 + GFF40 0.35 -0.7 49,346 + GFF40 0.35 -0.3 49,347 - GFF40 0.35 -0.4 49,760 + GFF40 0.73 +0.3 49,761 - GFF40 0.73 +0.1 49,761 - GFF40 0.73 -0.5 49,761 - GFF40 0.73 -0.2 49,761 - GFF40 0.73 -1.4 49,761 - GFF40 0.73 +0.2 49,761 - GFF40 0.73 +0.6 49,761 - GFF40 0.73 -0.8 49,761 - GFF40 0.73 -1.3 49,793 + GFF40 0.76 +0.0 49,794 - GFF40 0.76 +0.6 49,833 + GFF40 0.80 +1.6 49,974 - +0.4 50,228 - GFF41 0.16 +1.4 50,275 + GFF41 0.20 +1.0 50,275 + GFF41 0.20 +0.4 50,275 + GFF41 0.20 -0.2 50,275 + GFF41 0.20 -0.2 50,276 - GFF41 0.20 -0.3 50,276 - GFF41 0.20 +0.3 50,422 + GFF41 0.34 +0.4 50,465 - GFF41 0.38 -2.1 50,465 - GFF41 0.38 -0.6 50,465 - GFF41 0.38 +0.9 50,548 + GFF41 0.46 -0.4 50,548 + GFF41 0.46 +0.5 50,639 - GFF41 0.55 +1.1 50,699 - GFF41 0.61 -0.5 50,765 - GFF41 0.67 +2.2 50,989 + GFF41 0.88 +0.3
Or see this region's nucleotide sequence