Strain Fitness in Xanthobacter sp. DMC5 around GFF4

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2 and GFF3 are separated by 14 nucleotidesGFF3 and GFF4 are separated by 179 nucleotidesGFF4 and GFF5 are separated by 5 nucleotides GFF2 - Protein translocase subunit SecE, at 1,391 to 1,588 GFF2 GFF3 - Transcription termination/antitermination protein NusG, at 1,603 to 2,133 GFF3 GFF4 - 50S ribosomal protein L11, at 2,313 to 2,762 GFF4 GFF5 - 50S ribosomal protein L1, at 2,768 to 3,466 GFF5 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 3.648 kb on + strandat 3.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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3,648 + -0.0
3,648 + -1.8

Or see this region's nucleotide sequence