Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3994 and GFF3995 are separated by 119 nucleotides GFF3995 and GFF3996 are separated by 150 nucleotides GFF3996 and GFF3997 are separated by 71 nucleotides
GFF3994 - ATP-dependent RNA helicase HrpB, at 366,064 to 368,571
GFF3994
GFF3995 - hypothetical protein, at 368,691 to 369,695
GFF3995
GFF3996 - putative acetoacetate decarboxylase, at 369,846 to 370,595
GFF3996
GFF3997 - hypothetical protein, at 370,667 to 371,818
GFF3997
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.053 kb on + strand, within GFF3994 at 368.587 kb on + strand at 368.654 kb on + strand at 369.027 kb on + strand, within GFF3995 at 369.052 kb on + strand, within GFF3995 at 369.052 kb on + strand, within GFF3995 at 369.052 kb on + strand, within GFF3995 at 369.053 kb on - strand, within GFF3995 at 369.053 kb on - strand, within GFF3995 at 369.053 kb on - strand, within GFF3995 at 369.053 kb on - strand, within GFF3995 at 369.205 kb on - strand, within GFF3995 at 369.205 kb on - strand, within GFF3995 at 369.787 kb on + strand at 369.787 kb on + strand at 369.788 kb on - strand at 369.788 kb on - strand at 369.877 kb on - strand at 369.939 kb on + strand, within GFF3996 at 369.939 kb on + strand, within GFF3996 at 369.940 kb on - strand, within GFF3996 at 369.954 kb on + strand, within GFF3996 at 370.026 kb on + strand, within GFF3996 at 370.026 kb on + strand, within GFF3996 at 370.069 kb on - strand, within GFF3996 at 370.122 kb on + strand, within GFF3996 at 370.137 kb on + strand, within GFF3996 at 370.138 kb on - strand, within GFF3996 at 370.138 kb on - strand, within GFF3996 at 370.198 kb on - strand, within GFF3996 at 370.198 kb on - strand, within GFF3996 at 370.198 kb on - strand, within GFF3996 at 370.287 kb on + strand, within GFF3996 at 370.404 kb on + strand, within GFF3996 at 370.404 kb on + strand, within GFF3996 at 370.404 kb on + strand, within GFF3996 at 370.405 kb on - strand, within GFF3996 at 370.405 kb on - strand, within GFF3996 at 370.408 kb on - strand, within GFF3996 at 370.408 kb on - strand, within GFF3996 at 370.567 kb on - strand at 370.567 kb on - strand at 370.567 kb on - strand at 370.572 kb on + strand at 370.572 kb on + strand at 370.573 kb on - strand at 370.573 kb on - strand at 370.573 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 368,053 + GFF3994 0.79 -0.4 368,587 + -1.0 368,654 + -0.4 369,027 + GFF3995 0.33 -1.9 369,052 + GFF3995 0.36 +0.4 369,052 + GFF3995 0.36 +2.3 369,052 + GFF3995 0.36 -0.2 369,053 - GFF3995 0.36 +0.1 369,053 - GFF3995 0.36 +0.3 369,053 - GFF3995 0.36 +0.7 369,053 - GFF3995 0.36 +0.3 369,205 - GFF3995 0.51 +0.9 369,205 - GFF3995 0.51 +1.0 369,787 + -0.1 369,787 + -0.3 369,788 - +1.1 369,788 - +0.2 369,877 - +0.3 369,939 + GFF3996 0.12 -0.5 369,939 + GFF3996 0.12 +0.1 369,940 - GFF3996 0.13 +0.2 369,954 + GFF3996 0.14 +0.5 370,026 + GFF3996 0.24 +0.6 370,026 + GFF3996 0.24 -1.0 370,069 - GFF3996 0.30 +0.5 370,122 + GFF3996 0.37 +0.5 370,137 + GFF3996 0.39 -1.3 370,138 - GFF3996 0.39 -2.2 370,138 - GFF3996 0.39 +0.4 370,198 - GFF3996 0.47 -0.4 370,198 - GFF3996 0.47 +0.6 370,198 - GFF3996 0.47 -0.9 370,287 + GFF3996 0.59 +0.9 370,404 + GFF3996 0.74 +0.1 370,404 + GFF3996 0.74 +1.5 370,404 + GFF3996 0.74 -0.4 370,405 - GFF3996 0.75 +0.1 370,405 - GFF3996 0.75 +0.6 370,408 - GFF3996 0.75 -0.2 370,408 - GFF3996 0.75 +1.1 370,567 - +1.7 370,567 - -0.6 370,567 - +0.3 370,572 + -0.6 370,572 + -0.2 370,573 - -0.3 370,573 - +0.6 370,573 - +1.0
Or see this region's nucleotide sequence