Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3975 and GFF3976 are separated by 215 nucleotides GFF3976 and GFF3977 are separated by 10 nucleotides GFF3977 and GFF3978 are separated by 70 nucleotides GFF3978 and GFF3979 are separated by 87 nucleotides
GFF3975 - Nitrate import ATP-binding protein NrtD, at 343,756 to 344,631
GFF3975
GFF3976 - Ferredoxin-2, at 344,847 to 345,182
GFF3976
GFF3977 - Ferredoxin--NADP reductase, at 345,193 to 345,966
GFF3977
GFF3978 - hypothetical protein, at 346,037 to 346,609
GFF3978
GFF3979 - hypothetical protein, at 346,697 to 347,764
GFF3979
Position (kb) 345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.401 kb on + strand, within GFF3975 at 344.402 kb on - strand, within GFF3975 at 344.402 kb on - strand, within GFF3975 at 344.764 kb on - strand at 344.783 kb on + strand at 344.784 kb on - strand at 344.853 kb on + strand at 344.854 kb on - strand at 344.854 kb on - strand at 344.889 kb on - strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.926 kb on - strand, within GFF3976 at 344.926 kb on - strand, within GFF3976 at 345.063 kb on + strand, within GFF3976 at 345.349 kb on + strand, within GFF3977 at 345.350 kb on - strand, within GFF3977 at 345.523 kb on + strand, within GFF3977 at 345.523 kb on + strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.586 kb on + strand, within GFF3977 at 345.587 kb on - strand, within GFF3977 at 345.587 kb on - strand, within GFF3977 at 345.697 kb on + strand, within GFF3977 at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.935 kb on - strand at 345.935 kb on - strand at 346.015 kb on + strand at 346.015 kb on + strand at 346.016 kb on - strand at 346.016 kb on - strand at 346.059 kb on + strand at 346.059 kb on + strand at 346.251 kb on - strand, within GFF3978 at 346.251 kb on - strand, within GFF3978 at 346.251 kb on - strand, within GFF3978 at 346.251 kb on - strand, within GFF3978 at 346.322 kb on + strand, within GFF3978 at 346.322 kb on + strand, within GFF3978 at 346.322 kb on + strand, within GFF3978 at 346.323 kb on - strand, within GFF3978 at 346.323 kb on - strand, within GFF3978 at 346.422 kb on - strand, within GFF3978 at 346.422 kb on - strand, within GFF3978 at 346.436 kb on + strand, within GFF3978 at 346.436 kb on + strand, within GFF3978 at 346.436 kb on + strand, within GFF3978 at 346.455 kb on - strand, within GFF3978 at 346.455 kb on - strand, within GFF3978 at 346.473 kb on + strand, within GFF3978 at 346.475 kb on + strand, within GFF3978 at 346.476 kb on - strand, within GFF3978 at 346.484 kb on + strand, within GFF3978 at 346.527 kb on - strand, within GFF3978 at 346.809 kb on - strand, within GFF3979 at 346.810 kb on + strand, within GFF3979 at 346.810 kb on + strand, within GFF3979 at 346.810 kb on + strand, within GFF3979
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 344,401 + GFF3975 0.74 +0.4 344,402 - GFF3975 0.74 -1.0 344,402 - GFF3975 0.74 +2.1 344,764 - -0.9 344,783 + +1.0 344,784 - -1.5 344,853 + +2.1 344,854 - +0.5 344,854 - +1.1 344,889 - GFF3976 0.12 +0.3 344,925 + GFF3976 0.23 -0.1 344,925 + GFF3976 0.23 +0.1 344,925 + GFF3976 0.23 +1.8 344,926 - GFF3976 0.24 +1.8 344,926 - GFF3976 0.24 +0.3 345,063 + GFF3976 0.64 -0.0 345,349 + GFF3977 0.20 +0.7 345,350 - GFF3977 0.20 -1.4 345,523 + GFF3977 0.43 -0.0 345,523 + GFF3977 0.43 +0.5 345,524 - GFF3977 0.43 -2.5 345,524 - GFF3977 0.43 +0.7 345,524 - GFF3977 0.43 -0.1 345,586 + GFF3977 0.51 +2.0 345,587 - GFF3977 0.51 +0.5 345,587 - GFF3977 0.51 +0.4 345,697 + GFF3977 0.65 -0.0 345,934 + -0.3 345,934 + +0.5 345,934 + +0.7 345,935 - -0.3 345,935 - -0.0 346,015 + -0.8 346,015 + -0.7 346,016 - -0.4 346,016 - +0.1 346,059 + +0.5 346,059 + +0.5 346,251 - GFF3978 0.37 +1.1 346,251 - GFF3978 0.37 +0.1 346,251 - GFF3978 0.37 +0.1 346,251 - GFF3978 0.37 +2.1 346,322 + GFF3978 0.50 +0.2 346,322 + GFF3978 0.50 +0.7 346,322 + GFF3978 0.50 +0.5 346,323 - GFF3978 0.50 +2.1 346,323 - GFF3978 0.50 +0.1 346,422 - GFF3978 0.67 -1.4 346,422 - GFF3978 0.67 -0.5 346,436 + GFF3978 0.70 -0.3 346,436 + GFF3978 0.70 -0.1 346,436 + GFF3978 0.70 +0.5 346,455 - GFF3978 0.73 +0.8 346,455 - GFF3978 0.73 -0.0 346,473 + GFF3978 0.76 +0.8 346,475 + GFF3978 0.76 +0.3 346,476 - GFF3978 0.77 +0.4 346,484 + GFF3978 0.78 -1.5 346,527 - GFF3978 0.86 +0.9 346,809 - GFF3979 0.10 +0.0 346,810 + GFF3979 0.11 +2.3 346,810 + GFF3979 0.11 +1.4 346,810 + GFF3979 0.11 +0.1
Or see this region's nucleotide sequence