Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3973 and GFF3974 are separated by 5 nucleotides GFF3974 and GFF3975 are separated by 7 nucleotides GFF3975 and GFF3976 are separated by 215 nucleotides GFF3976 and GFF3977 are separated by 10 nucleotides
GFF3973 - hypothetical protein, at 341,344 to 342,777
GFF3973
GFF3974 - hypothetical protein, at 342,783 to 343,748
GFF3974
GFF3975 - Nitrate import ATP-binding protein NrtD, at 343,756 to 344,631
GFF3975
GFF3976 - Ferredoxin-2, at 344,847 to 345,182
GFF3976
GFF3977 - Ferredoxin--NADP reductase, at 345,193 to 345,966
GFF3977
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.074 kb on + strand, within GFF3974 at 343.074 kb on + strand, within GFF3974 at 343.074 kb on + strand, within GFF3974 at 343.074 kb on + strand, within GFF3974 at 343.074 kb on + strand, within GFF3974 at 343.075 kb on - strand, within GFF3974 at 343.075 kb on - strand, within GFF3974 at 343.075 kb on - strand, within GFF3974 at 343.164 kb on + strand, within GFF3974 at 343.164 kb on + strand, within GFF3974 at 343.165 kb on - strand, within GFF3974 at 343.165 kb on - strand, within GFF3974 at 343.494 kb on + strand, within GFF3974 at 343.495 kb on - strand, within GFF3974 at 343.541 kb on + strand, within GFF3974 at 343.605 kb on + strand, within GFF3974 at 343.605 kb on + strand, within GFF3974 at 343.623 kb on + strand, within GFF3974 at 343.624 kb on - strand, within GFF3974 at 343.638 kb on + strand, within GFF3974 at 343.639 kb on - strand, within GFF3974 at 343.822 kb on + strand at 344.038 kb on + strand, within GFF3975 at 344.038 kb on + strand, within GFF3975 at 344.176 kb on + strand, within GFF3975 at 344.401 kb on + strand, within GFF3975 at 344.402 kb on - strand, within GFF3975 at 344.402 kb on - strand, within GFF3975 at 344.764 kb on - strand at 344.783 kb on + strand at 344.784 kb on - strand at 344.853 kb on + strand at 344.854 kb on - strand at 344.854 kb on - strand at 344.889 kb on - strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.925 kb on + strand, within GFF3976 at 344.926 kb on - strand, within GFF3976 at 344.926 kb on - strand, within GFF3976 at 345.063 kb on + strand, within GFF3976 at 345.349 kb on + strand, within GFF3977 at 345.350 kb on - strand, within GFF3977 at 345.523 kb on + strand, within GFF3977 at 345.523 kb on + strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.524 kb on - strand, within GFF3977 at 345.586 kb on + strand, within GFF3977 at 345.587 kb on - strand, within GFF3977 at 345.587 kb on - strand, within GFF3977
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 343,074 + GFF3974 0.30 +0.4 343,074 + GFF3974 0.30 +0.5 343,074 + GFF3974 0.30 +0.8 343,074 + GFF3974 0.30 +0.4 343,074 + GFF3974 0.30 -2.1 343,075 - GFF3974 0.30 -0.4 343,075 - GFF3974 0.30 +0.4 343,075 - GFF3974 0.30 -0.0 343,164 + GFF3974 0.39 -0.3 343,164 + GFF3974 0.39 +1.8 343,165 - GFF3974 0.40 +0.1 343,165 - GFF3974 0.40 -1.6 343,494 + GFF3974 0.74 -0.4 343,495 - GFF3974 0.74 +0.7 343,541 + GFF3974 0.78 +0.7 343,605 + GFF3974 0.85 +0.1 343,605 + GFF3974 0.85 -0.6 343,623 + GFF3974 0.87 -0.5 343,624 - GFF3974 0.87 -0.5 343,638 + GFF3974 0.89 -0.1 343,639 - GFF3974 0.89 -0.6 343,822 + -0.1 344,038 + GFF3975 0.32 -0.3 344,038 + GFF3975 0.32 +0.3 344,176 + GFF3975 0.48 +0.0 344,401 + GFF3975 0.74 +0.4 344,402 - GFF3975 0.74 -1.0 344,402 - GFF3975 0.74 +2.1 344,764 - -0.9 344,783 + +1.0 344,784 - -1.5 344,853 + +2.1 344,854 - +0.5 344,854 - +1.1 344,889 - GFF3976 0.12 +0.3 344,925 + GFF3976 0.23 -0.1 344,925 + GFF3976 0.23 +0.1 344,925 + GFF3976 0.23 +1.8 344,926 - GFF3976 0.24 +1.8 344,926 - GFF3976 0.24 +0.3 345,063 + GFF3976 0.64 -0.0 345,349 + GFF3977 0.20 +0.7 345,350 - GFF3977 0.20 -1.4 345,523 + GFF3977 0.43 -0.0 345,523 + GFF3977 0.43 +0.5 345,524 - GFF3977 0.43 -2.5 345,524 - GFF3977 0.43 +0.7 345,524 - GFF3977 0.43 -0.1 345,586 + GFF3977 0.51 +2.0 345,587 - GFF3977 0.51 +0.5 345,587 - GFF3977 0.51 +0.4
Or see this region's nucleotide sequence