Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3970 and GFF3971 are separated by 146 nucleotides GFF3971 and GFF3972 are separated by 80 nucleotides GFF3972 and GFF3973 are separated by 169 nucleotides
GFF3970 - ATP synthase epsilon chain, at 339,137 to 339,559
GFF3970
GFF3971 - tRNA-specific adenosine deaminase, at 339,706 to 340,317
GFF3971
GFF3972 - CRP-like cAMP-activated global transcriptional regulator, at 340,398 to 341,174
GFF3972
GFF3973 - hypothetical protein, at 341,344 to 342,777
GFF3973
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1
2 at 339.515 kb on + strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 339.516 kb on - strand, within GFF3970 at 340.078 kb on + strand, within GFF3971 at 340.078 kb on + strand, within GFF3971 at 340.079 kb on - strand, within GFF3971 at 340.352 kb on + strand at 340.352 kb on + strand at 340.352 kb on + strand at 340.353 kb on - strand at 340.390 kb on + strand at 340.390 kb on + strand at 340.588 kb on - strand, within GFF3972 at 340.705 kb on - strand, within GFF3972 at 340.893 kb on + strand, within GFF3972 at 340.894 kb on - strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.974 kb on + strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 340.975 kb on - strand, within GFF3972 at 341.133 kb on + strand at 341.249 kb on - strand at 341.249 kb on - strand at 341.323 kb on + strand at 341.323 kb on + strand at 341.324 kb on - strand at 341.324 kb on - strand at 341.324 kb on - strand at 341.522 kb on - strand, within GFF3973 at 341.522 kb on - strand, within GFF3973 at 341.558 kb on - strand, within GFF3973 at 341.624 kb on + strand, within GFF3973 at 341.625 kb on - strand, within GFF3973 at 341.648 kb on - strand, within GFF3973 at 341.668 kb on + strand, within GFF3973 at 341.668 kb on + strand, within GFF3973 at 341.722 kb on + strand, within GFF3973 at 341.732 kb on - strand, within GFF3973 at 341.732 kb on - strand, within GFF3973 at 341.773 kb on + strand, within GFF3973 at 341.774 kb on - strand, within GFF3973 at 341.774 kb on - strand, within GFF3973 at 341.776 kb on + strand, within GFF3973 at 341.776 kb on + strand, within GFF3973 at 341.777 kb on - strand, within GFF3973 at 341.881 kb on + strand, within GFF3973 at 342.100 kb on + strand, within GFF3973 at 342.101 kb on - strand, within GFF3973
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 339,515 + GFF3970 0.89 -0.7 339,516 - GFF3970 0.90 +0.8 339,516 - GFF3970 0.90 +0.2 339,516 - GFF3970 0.90 +0.2 339,516 - GFF3970 0.90 -0.1 339,516 - GFF3970 0.90 -0.5 340,078 + GFF3971 0.61 -0.6 340,078 + GFF3971 0.61 +0.9 340,079 - GFF3971 0.61 -0.8 340,352 + -1.5 340,352 + -0.3 340,352 + -0.0 340,353 - -0.8 340,390 + +0.1 340,390 + -0.5 340,588 - GFF3972 0.24 +0.5 340,705 - GFF3972 0.40 +0.5 340,893 + GFF3972 0.64 +0.2 340,894 - GFF3972 0.64 +1.7 340,974 + GFF3972 0.74 -0.8 340,974 + GFF3972 0.74 -0.4 340,974 + GFF3972 0.74 +0.3 340,975 - GFF3972 0.74 +0.8 340,975 - GFF3972 0.74 +0.1 340,975 - GFF3972 0.74 +0.3 340,975 - GFF3972 0.74 +0.3 341,133 + +0.6 341,249 - -0.6 341,249 - +0.2 341,323 + +0.5 341,323 + +1.5 341,324 - -1.2 341,324 - +0.2 341,324 - +1.2 341,522 - GFF3973 0.12 +0.8 341,522 - GFF3973 0.12 -0.0 341,558 - GFF3973 0.15 +0.3 341,624 + GFF3973 0.20 +2.3 341,625 - GFF3973 0.20 +1.1 341,648 - GFF3973 0.21 +0.3 341,668 + GFF3973 0.23 -0.4 341,668 + GFF3973 0.23 +0.1 341,722 + GFF3973 0.26 +0.5 341,732 - GFF3973 0.27 +0.2 341,732 - GFF3973 0.27 +0.4 341,773 + GFF3973 0.30 +1.1 341,774 - GFF3973 0.30 -1.3 341,774 - GFF3973 0.30 +0.7 341,776 + GFF3973 0.30 +2.5 341,776 + GFF3973 0.30 -0.4 341,777 - GFF3973 0.30 +0.1 341,881 + GFF3973 0.37 -0.8 342,100 + GFF3973 0.53 +0.6 342,101 - GFF3973 0.53 +1.0
Or see this region's nucleotide sequence