Strain Fitness in Xanthobacter sp. DMC5 around GFF3968

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3966 and GFF3967 are separated by 36 nucleotidesGFF3967 and GFF3968 are separated by 33 nucleotidesGFF3968 and GFF3969 are separated by 27 nucleotidesGFF3969 and GFF3970 are separated by 132 nucleotidesGFF3970 and GFF3971 are separated by 146 nucleotides GFF3966 - ATP synthase subunit alpha, at 334,829 to 336,361 GFF3966 GFF3967 - ATP synthase gamma chain, at 336,398 to 337,273 GFF3967 GFF3968 - ATP synthase subunit beta, at 337,307 to 338,743 GFF3968 GFF3969 - hypothetical protein, at 338,771 to 339,004 GFF3969 GFF3970 - ATP synthase epsilon chain, at 339,137 to 339,559 GFF3970 GFF3971 - tRNA-specific adenosine deaminase, at 339,706 to 340,317 GFF3971 Position (kb) 337 338 339Strain fitness (log2 ratio) -1 0 1at 339.515 kb on + strand, within GFF3970at 339.516 kb on - strand, within GFF3970at 339.516 kb on - strand, within GFF3970at 339.516 kb on - strand, within GFF3970at 339.516 kb on - strand, within GFF3970at 339.516 kb on - strand, within GFF3970

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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339,515 + GFF3970 0.89 -0.7
339,516 - GFF3970 0.90 +0.8
339,516 - GFF3970 0.90 +0.2
339,516 - GFF3970 0.90 +0.2
339,516 - GFF3970 0.90 -0.1
339,516 - GFF3970 0.90 -0.5

Or see this region's nucleotide sequence