Strain Fitness in Xanthobacter sp. DMC5 around GFF3966

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3964 and GFF3965 are separated by 236 nucleotidesGFF3965 and GFF3966 overlap by 1 nucleotidesGFF3966 and GFF3967 are separated by 36 nucleotidesGFF3967 and GFF3968 are separated by 33 nucleotides GFF3964 - Glutamine transport ATP-binding protein GlnQ, at 333,313 to 334,038 GFF3964 GFF3965 - ATP synthase subunit delta, at 334,275 to 334,829 GFF3965 GFF3966 - ATP synthase subunit alpha, at 334,829 to 336,361 GFF3966 GFF3967 - ATP synthase gamma chain, at 336,398 to 337,273 GFF3967 GFF3968 - ATP synthase subunit beta, at 337,307 to 338,743 GFF3968 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -1 0 1at 333.986 kb on + strandat 333.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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333,986 + -0.4
333,987 - +0.2

Or see this region's nucleotide sequence