Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF394 and GFF395 are separated by 65 nucleotides GFF395 and GFF396 are separated by 22 nucleotides GFF396 and GFF397 are separated by 143 nucleotides
GFF394 - hypothetical protein, at 405,788 to 406,483
GFF394
GFF395 - hypothetical protein, at 406,549 to 406,923
GFF395
GFF396 - HTH-type transcriptional regulator NorG, at 406,946 to 408,310
GFF396
GFF397 - hypothetical protein, at 408,454 to 409,320
GFF397
Position (kb) 406
407
408
409 Strain fitness (log2 ratio) -1
0
1 at 405.962 kb on + strand, within GFF394 at 406.175 kb on + strand, within GFF394 at 406.178 kb on - strand, within GFF394 at 406.251 kb on - strand, within GFF394 at 406.609 kb on + strand, within GFF395 at 406.609 kb on + strand, within GFF395 at 406.610 kb on - strand, within GFF395 at 406.610 kb on - strand, within GFF395 at 406.921 kb on + strand at 406.922 kb on - strand at 406.922 kb on - strand at 407.136 kb on + strand, within GFF396 at 407.136 kb on + strand, within GFF396 at 407.137 kb on - strand, within GFF396 at 407.601 kb on + strand, within GFF396 at 407.602 kb on - strand, within GFF396 at 407.602 kb on - strand, within GFF396 at 407.904 kb on + strand, within GFF396 at 408.138 kb on + strand, within GFF396 at 408.192 kb on + strand at 408.192 kb on + strand at 408.192 kb on + strand at 408.193 kb on - strand at 408.391 kb on + strand at 408.391 kb on + strand at 408.653 kb on + strand, within GFF397 at 408.653 kb on + strand, within GFF397 at 408.653 kb on + strand, within GFF397 at 408.654 kb on - strand, within GFF397 at 408.683 kb on + strand, within GFF397 at 408.683 kb on + strand, within GFF397 at 408.683 kb on + strand, within GFF397 at 409.099 kb on + strand, within GFF397
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 405,962 + GFF394 0.25 -0.6 406,175 + GFF394 0.56 -0.6 406,178 - GFF394 0.56 +0.1 406,251 - GFF394 0.67 +0.6 406,609 + GFF395 0.16 +0.4 406,609 + GFF395 0.16 -0.6 406,610 - GFF395 0.16 -0.3 406,610 - GFF395 0.16 +1.0 406,921 + -0.6 406,922 - +0.2 406,922 - +0.2 407,136 + GFF396 0.14 -0.3 407,136 + GFF396 0.14 -0.3 407,137 - GFF396 0.14 -0.9 407,601 + GFF396 0.48 -0.1 407,602 - GFF396 0.48 +1.0 407,602 - GFF396 0.48 +0.6 407,904 + GFF396 0.70 -0.6 408,138 + GFF396 0.87 -0.7 408,192 + +1.2 408,192 + -0.7 408,192 + -0.6 408,193 - -0.8 408,391 + +0.7 408,391 + +0.0 408,653 + GFF397 0.23 -1.6 408,653 + GFF397 0.23 +0.6 408,653 + GFF397 0.23 -0.4 408,654 - GFF397 0.23 +0.4 408,683 + GFF397 0.26 -0.4 408,683 + GFF397 0.26 -0.7 408,683 + GFF397 0.26 -0.7 409,099 + GFF397 0.74 -0.4
Or see this region's nucleotide sequence