Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3951 and GFF3952 are separated by 6 nucleotides GFF3952 and GFF3953 overlap by 4 nucleotides GFF3953 and GFF3954 are separated by 135 nucleotides GFF3954 and GFF3955 are separated by 33 nucleotides
GFF3951 - hypothetical protein, at 318,480 to 319,169
GFF3951
GFF3952 - hypothetical protein, at 319,176 to 319,790
GFF3952
GFF3953 - hypothetical protein, at 319,787 to 320,719
GFF3953
GFF3954 - hypothetical protein, at 320,855 to 321,184
GFF3954
GFF3955 - hypothetical protein, at 321,218 to 322,654
GFF3955
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 318.903 kb on + strand, within GFF3951 at 318.904 kb on - strand, within GFF3951 at 318.905 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 319.020 kb on + strand, within GFF3951 at 319.921 kb on + strand, within GFF3953 at 319.921 kb on + strand, within GFF3953 at 320.224 kb on - strand, within GFF3953 at 320.559 kb on - strand, within GFF3953 at 320.684 kb on - strand at 321.238 kb on - strand at 321.238 kb on - strand at 321.238 kb on - strand at 321.264 kb on + strand at 321.265 kb on - strand at 321.265 kb on - strand at 321.406 kb on - strand, within GFF3955 at 321.527 kb on - strand, within GFF3955 at 321.606 kb on + strand, within GFF3955 at 321.679 kb on + strand, within GFF3955
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 318,903 + GFF3951 0.61 -0.9 318,904 - GFF3951 0.61 -0.4 318,905 + GFF3951 0.62 -0.5 318,939 + GFF3951 0.67 -2.0 318,939 + GFF3951 0.67 +0.2 318,939 + GFF3951 0.67 +0.2 318,940 - GFF3951 0.67 -0.5 318,940 - GFF3951 0.67 +1.0 318,940 - GFF3951 0.67 -0.6 319,020 + GFF3951 0.78 -0.8 319,921 + GFF3953 0.14 +0.8 319,921 + GFF3953 0.14 +1.1 320,224 - GFF3953 0.47 +0.5 320,559 - GFF3953 0.83 -2.0 320,684 - +0.7 321,238 - -0.0 321,238 - -0.1 321,238 - +0.1 321,264 + +1.2 321,265 - +0.1 321,265 - +0.6 321,406 - GFF3955 0.13 +0.5 321,527 - GFF3955 0.22 -0.3 321,606 + GFF3955 0.27 +1.1 321,679 + GFF3955 0.32 -0.4
Or see this region's nucleotide sequence