Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3948 and GFF3949 are separated by 34 nucleotides GFF3949 and GFF3950 are separated by 146 nucleotides GFF3950 and GFF3951 are separated by 138 nucleotides GFF3951 and GFF3952 are separated by 6 nucleotides GFF3952 and GFF3953 overlap by 4 nucleotides
GFF3948 - Ribosomal silencing factor RsfS, at 317,187 to 317,552
GFF3948
GFF3949 - Ribosomal RNA large subunit methyltransferase H, at 317,587 to 318,069
GFF3949
GFF3950 - 50S ribosomal protein L36, at 318,216 to 318,341
GFF3950
GFF3951 - hypothetical protein, at 318,480 to 319,169
GFF3951
GFF3952 - hypothetical protein, at 319,176 to 319,790
GFF3952
GFF3953 - hypothetical protein, at 319,787 to 320,719
GFF3953
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1 at 317.512 kb on - strand, within GFF3948 at 317.512 kb on - strand, within GFF3948 at 317.512 kb on - strand, within GFF3948 at 317.516 kb on + strand at 317.580 kb on - strand at 317.653 kb on + strand, within GFF3949 at 318.022 kb on + strand at 318.022 kb on + strand at 318.022 kb on + strand at 318.055 kb on + strand at 318.370 kb on + strand at 318.903 kb on + strand, within GFF3951 at 318.904 kb on - strand, within GFF3951 at 318.905 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.939 kb on + strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 318.940 kb on - strand, within GFF3951 at 319.020 kb on + strand, within GFF3951 at 319.921 kb on + strand, within GFF3953 at 319.921 kb on + strand, within GFF3953
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 317,512 - GFF3948 0.89 -0.0 317,512 - GFF3948 0.89 -0.3 317,512 - GFF3948 0.89 -0.2 317,516 + +1.2 317,580 - +0.4 317,653 + GFF3949 0.14 -1.3 318,022 + -0.4 318,022 + -0.0 318,022 + -0.1 318,055 + +0.5 318,370 + +1.5 318,903 + GFF3951 0.61 -0.9 318,904 - GFF3951 0.61 -0.4 318,905 + GFF3951 0.62 -0.5 318,939 + GFF3951 0.67 -2.0 318,939 + GFF3951 0.67 +0.2 318,939 + GFF3951 0.67 +0.2 318,940 - GFF3951 0.67 -0.5 318,940 - GFF3951 0.67 +1.0 318,940 - GFF3951 0.67 -0.6 319,020 + GFF3951 0.78 -0.8 319,921 + GFF3953 0.14 +0.8 319,921 + GFF3953 0.14 +1.1
Or see this region's nucleotide sequence