Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3945 and GFF3946 are separated by 100 nucleotides GFF3946 and GFF3947 overlap by 1 nucleotides GFF3947 and GFF3948 are separated by 109 nucleotides
GFF3945 - hypothetical protein, at 314,030 to 314,977
GFF3945
GFF3946 - Gamma-glutamyl phosphate reductase, at 315,078 to 316,400
GFF3946
GFF3947 - nicotinate-nucleotide adenylyltransferase, at 316,400 to 317,077
GFF3947
GFF3948 - Ribosomal silencing factor RsfS, at 317,187 to 317,552
GFF3948
Position (kb) 315
316
317 Strain fitness (log2 ratio) -1
0
1 at 314.078 kb on + strand at 314.129 kb on + strand, within GFF3945 at 314.247 kb on + strand, within GFF3945 at 314.248 kb on - strand, within GFF3945 at 314.267 kb on + strand, within GFF3945 at 314.267 kb on + strand, within GFF3945 at 314.267 kb on + strand, within GFF3945 at 314.268 kb on - strand, within GFF3945 at 314.268 kb on - strand, within GFF3945 at 314.361 kb on - strand, within GFF3945 at 314.378 kb on - strand, within GFF3945 at 314.395 kb on + strand, within GFF3945 at 314.396 kb on - strand, within GFF3945 at 314.396 kb on - strand, within GFF3945 at 314.676 kb on + strand, within GFF3945 at 314.876 kb on + strand, within GFF3945
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 314,078 + +1.0 314,129 + GFF3945 0.10 -0.8 314,247 + GFF3945 0.23 +0.2 314,248 - GFF3945 0.23 -0.5 314,267 + GFF3945 0.25 +0.1 314,267 + GFF3945 0.25 -0.4 314,267 + GFF3945 0.25 +0.5 314,268 - GFF3945 0.25 -0.7 314,268 - GFF3945 0.25 -0.6 314,361 - GFF3945 0.35 +0.4 314,378 - GFF3945 0.37 +0.1 314,395 + GFF3945 0.39 -0.1 314,396 - GFF3945 0.39 -1.0 314,396 - GFF3945 0.39 +0.1 314,676 + GFF3945 0.68 -0.6 314,876 + GFF3945 0.89 -1.7
Or see this region's nucleotide sequence