Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3937 and GFF3938 are separated by 156 nucleotides GFF3938 and GFF3939 overlap by 4 nucleotides GFF3939 and GFF3940 are separated by 6 nucleotides
GFF3937 - hypothetical protein, at 305,381 to 306,097
GFF3937
GFF3938 - Membrane-bound lytic murein transglycosylase A, at 306,254 to 307,393
GFF3938
GFF3939 - hypothetical protein, at 307,390 to 307,986
GFF3939
GFF3940 - hypothetical protein, at 307,993 to 308,694
GFF3940
Position (kb) 306
307
308 Strain fitness (log2 ratio) -1
0
1
2 at 305.279 kb on + strand at 305.279 kb on + strand at 305.280 kb on - strand at 305.280 kb on - strand at 305.394 kb on - strand at 305.394 kb on - strand at 305.483 kb on + strand, within GFF3937 at 305.914 kb on + strand, within GFF3937 at 306.298 kb on - strand at 306.573 kb on - strand, within GFF3938 at 306.573 kb on - strand, within GFF3938 at 306.585 kb on - strand, within GFF3938 at 306.734 kb on + strand, within GFF3938 at 306.735 kb on - strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.908 kb on + strand, within GFF3938 at 306.909 kb on - strand, within GFF3938 at 306.909 kb on - strand, within GFF3938 at 307.101 kb on + strand, within GFF3938 at 307.101 kb on + strand, within GFF3938 at 307.151 kb on + strand, within GFF3938 at 307.152 kb on - strand, within GFF3938 at 307.152 kb on - strand, within GFF3938 at 307.960 kb on + strand at 307.961 kb on - strand at 307.961 kb on - strand at 308.071 kb on + strand, within GFF3940
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 305,279 + +0.2 305,279 + -1.4 305,280 - -1.5 305,280 - -0.7 305,394 - -1.5 305,394 - -0.3 305,483 + GFF3937 0.14 -0.7 305,914 + GFF3937 0.74 -0.0 306,298 - +0.5 306,573 - GFF3938 0.28 +0.5 306,573 - GFF3938 0.28 -0.3 306,585 - GFF3938 0.29 -1.3 306,734 + GFF3938 0.42 +0.5 306,735 - GFF3938 0.42 +0.2 306,908 + GFF3938 0.57 -0.8 306,908 + GFF3938 0.57 +0.5 306,908 + GFF3938 0.57 +0.2 306,909 - GFF3938 0.57 -0.8 306,909 - GFF3938 0.57 -0.2 307,101 + GFF3938 0.74 -1.0 307,101 + GFF3938 0.74 +0.3 307,151 + GFF3938 0.79 +2.3 307,152 - GFF3938 0.79 -1.5 307,152 - GFF3938 0.79 +0.3 307,960 + +0.5 307,961 - +1.0 307,961 - -0.1 308,071 + GFF3940 0.11 -0.2
Or see this region's nucleotide sequence