Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3933 and GFF3934 are separated by 121 nucleotides GFF3934 and GFF3935 overlap by 4 nucleotides GFF3935 and GFF3936 are separated by 63 nucleotides
GFF3933 - Glucokinase, at 301,013 to 301,954
GFF3933
GFF3934 - hypothetical protein, at 302,076 to 303,566
GFF3934
GFF3935 - hypothetical protein, at 303,563 to 304,030
GFF3935
GFF3936 - hypothetical protein, at 304,094 to 305,068
GFF3936
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 301.200 kb on + strand, within GFF3933 at 301.200 kb on + strand, within GFF3933 at 301.200 kb on + strand, within GFF3933 at 301.201 kb on - strand, within GFF3933 at 301.201 kb on - strand, within GFF3933 at 301.815 kb on + strand, within GFF3933 at 301.815 kb on + strand, within GFF3933 at 301.845 kb on + strand, within GFF3933 at 301.982 kb on - strand at 302.338 kb on + strand, within GFF3934 at 302.339 kb on - strand, within GFF3934 at 302.359 kb on + strand, within GFF3934 at 302.504 kb on - strand, within GFF3934 at 302.560 kb on + strand, within GFF3934 at 302.734 kb on + strand, within GFF3934 at 302.734 kb on + strand, within GFF3934 at 302.735 kb on - strand, within GFF3934 at 302.824 kb on + strand, within GFF3934 at 303.231 kb on + strand, within GFF3934 at 303.283 kb on + strand, within GFF3934 at 303.284 kb on - strand, within GFF3934 at 303.298 kb on + strand, within GFF3934 at 303.405 kb on - strand, within GFF3934 at 303.617 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.630 kb on + strand, within GFF3935 at 303.631 kb on - strand, within GFF3935 at 303.631 kb on - strand, within GFF3935 at 303.758 kb on - strand, within GFF3935 at 303.759 kb on + strand, within GFF3935 at 303.760 kb on - strand, within GFF3935 at 303.760 kb on - strand, within GFF3935 at 304.183 kb on - strand at 304.236 kb on + strand, within GFF3936 at 304.237 kb on - strand, within GFF3936
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 301,200 + GFF3933 0.20 -0.2 301,200 + GFF3933 0.20 -0.3 301,200 + GFF3933 0.20 +0.6 301,201 - GFF3933 0.20 -2.0 301,201 - GFF3933 0.20 +0.2 301,815 + GFF3933 0.85 +1.0 301,815 + GFF3933 0.85 +0.1 301,845 + GFF3933 0.88 +0.3 301,982 - +1.2 302,338 + GFF3934 0.18 -0.7 302,339 - GFF3934 0.18 +0.6 302,359 + GFF3934 0.19 -0.3 302,504 - GFF3934 0.29 +0.5 302,560 + GFF3934 0.32 +1.3 302,734 + GFF3934 0.44 -0.3 302,734 + GFF3934 0.44 -1.4 302,735 - GFF3934 0.44 -0.9 302,824 + GFF3934 0.50 +1.4 303,231 + GFF3934 0.77 +0.2 303,283 + GFF3934 0.81 -0.6 303,284 - GFF3934 0.81 +1.7 303,298 + GFF3934 0.82 +0.2 303,405 - GFF3934 0.89 +0.0 303,617 + GFF3935 0.12 -0.3 303,630 + GFF3935 0.14 +0.5 303,630 + GFF3935 0.14 -0.9 303,630 + GFF3935 0.14 +0.6 303,630 + GFF3935 0.14 -0.0 303,630 + GFF3935 0.14 +0.1 303,630 + GFF3935 0.14 +0.2 303,630 + GFF3935 0.14 +0.6 303,631 - GFF3935 0.15 -0.1 303,631 - GFF3935 0.15 -0.3 303,758 - GFF3935 0.42 +0.7 303,759 + GFF3935 0.42 +0.4 303,760 - GFF3935 0.42 -0.9 303,760 - GFF3935 0.42 -1.9 304,183 - +0.2 304,236 + GFF3936 0.15 -0.5 304,237 - GFF3936 0.15 -0.3
Or see this region's nucleotide sequence