Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3924 and GFF3925 are separated by 177 nucleotides GFF3925 and GFF3926 overlap by 44 nucleotides GFF3926 and GFF3927 are separated by 129 nucleotides
GFF3924 - Ribosome hibernation promotion factor, at 292,985 to 293,569
GFF3924
GFF3925 - Cytochrome b561, at 293,747 to 294,298
GFF3925
GFF3926 - hypothetical protein, at 294,255 to 295,070
GFF3926
GFF3927 - GTP cyclohydrolase-2, at 295,200 to 296,312
GFF3927
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2 at 293.478 kb on + strand, within GFF3924 at 293.478 kb on + strand, within GFF3924 at 293.561 kb on + strand at 293.637 kb on + strand at 293.638 kb on - strand at 293.645 kb on + strand at 293.645 kb on + strand at 294.009 kb on + strand, within GFF3925 at 294.009 kb on + strand, within GFF3925 at 294.010 kb on - strand, within GFF3925 at 294.010 kb on - strand, within GFF3925 at 294.010 kb on - strand, within GFF3925 at 294.019 kb on - strand, within GFF3925 at 294.029 kb on - strand, within GFF3925 at 294.271 kb on - strand at 294.911 kb on + strand, within GFF3926 at 294.912 kb on - strand, within GFF3926 at 295.130 kb on + strand at 295.670 kb on - strand, within GFF3927 at 295.670 kb on - strand, within GFF3927 at 295.670 kb on - strand, within GFF3927 at 295.956 kb on + strand, within GFF3927 at 296.028 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.037 kb on + strand, within GFF3927 at 296.038 kb on - strand, within GFF3927
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 293,478 + GFF3924 0.84 -0.7 293,478 + GFF3924 0.84 -0.5 293,561 + +0.4 293,637 + -0.6 293,638 - -0.3 293,645 + -0.8 293,645 + -0.7 294,009 + GFF3925 0.47 -0.1 294,009 + GFF3925 0.47 +1.1 294,010 - GFF3925 0.48 -0.3 294,010 - GFF3925 0.48 -0.4 294,010 - GFF3925 0.48 -1.9 294,019 - GFF3925 0.49 +0.2 294,029 - GFF3925 0.51 +2.1 294,271 - +0.2 294,911 + GFF3926 0.80 +0.0 294,912 - GFF3926 0.81 +1.3 295,130 + +0.1 295,670 - GFF3927 0.42 +0.6 295,670 - GFF3927 0.42 -0.7 295,670 - GFF3927 0.42 -0.6 295,956 + GFF3927 0.68 +0.1 296,028 + GFF3927 0.74 -1.3 296,037 + GFF3927 0.75 +0.1 296,037 + GFF3927 0.75 +0.2 296,037 + GFF3927 0.75 +2.1 296,038 - GFF3927 0.75 -0.8
Or see this region's nucleotide sequence