Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3920 and GFF3921 are separated by 141 nucleotides GFF3921 and GFF3922 are separated by 43 nucleotides GFF3922 and GFF3923 are separated by 84 nucleotides GFF3923 and GFF3924 are separated by 399 nucleotides
GFF3920 - hypothetical protein, at 289,450 to 291,159
GFF3920
GFF3921 - Small heat shock protein IbpA, at 291,301 to 291,726
GFF3921
GFF3922 - hypothetical protein, at 291,770 to 292,036
GFF3922
GFF3923 - Nitrogen regulatory protein, at 292,121 to 292,585
GFF3923
GFF3924 - Ribosome hibernation promotion factor, at 292,985 to 293,569
GFF3924
Position (kb) 292
293 Strain fitness (log2 ratio) -1
0
1 at 291.205 kb on + strand at 291.206 kb on - strand at 291.404 kb on - strand, within GFF3921 at 291.763 kb on + strand at 292.747 kb on - strand at 292.986 kb on + strand at 292.986 kb on + strand at 292.986 kb on + strand at 293.232 kb on + strand, within GFF3924 at 293.232 kb on + strand, within GFF3924 at 293.233 kb on - strand, within GFF3924 at 293.233 kb on - strand, within GFF3924 at 293.233 kb on - strand, within GFF3924 at 293.478 kb on + strand, within GFF3924 at 293.478 kb on + strand, within GFF3924 at 293.561 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 291,205 + +0.1 291,206 - -0.5 291,404 - GFF3921 0.24 -0.8 291,763 + +0.2 292,747 - -0.6 292,986 + +0.8 292,986 + +0.1 292,986 + +0.8 293,232 + GFF3924 0.42 +0.5 293,232 + GFF3924 0.42 +0.7 293,233 - GFF3924 0.42 +0.1 293,233 - GFF3924 0.42 -0.5 293,233 - GFF3924 0.42 +0.3 293,478 + GFF3924 0.84 -0.7 293,478 + GFF3924 0.84 -0.5 293,561 + +0.4
Or see this region's nucleotide sequence