Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF390 and GFF391 overlap by 10 nucleotides GFF391 and GFF392 are separated by 93 nucleotides GFF392 and GFF393 are separated by 56 nucleotides
GFF390 - hypothetical protein, at 400,484 to 402,016
GFF390
GFF391 - Aminoalkylphosphonate N-acetyltransferase, at 402,007 to 402,495
GFF391
GFF392 - Disulfide-bond oxidoreductase YfcG, at 402,589 to 403,302
GFF392
GFF393 - Beta-barrel assembly-enhancing protease, at 403,359 to 405,335
GFF393
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 401.625 kb on + strand, within GFF390 at 401.625 kb on + strand, within GFF390 at 401.625 kb on + strand, within GFF390 at 401.684 kb on + strand, within GFF390 at 401.685 kb on - strand, within GFF390 at 402.514 kb on - strand at 403.689 kb on + strand, within GFF393 at 403.689 kb on + strand, within GFF393 at 403.690 kb on - strand, within GFF393 at 403.690 kb on - strand, within GFF393 at 403.704 kb on - strand, within GFF393 at 403.704 kb on - strand, within GFF393 at 403.704 kb on - strand, within GFF393 at 403.747 kb on - strand, within GFF393 at 403.914 kb on + strand, within GFF393 at 403.992 kb on + strand, within GFF393 at 403.992 kb on + strand, within GFF393 at 403.993 kb on - strand, within GFF393
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 401,625 + GFF390 0.74 -0.8 401,625 + GFF390 0.74 -0.6 401,625 + GFF390 0.74 +1.0 401,684 + GFF390 0.78 +0.7 401,685 - GFF390 0.78 -0.6 402,514 - +0.7 403,689 + GFF393 0.17 -0.3 403,689 + GFF393 0.17 -0.6 403,690 - GFF393 0.17 +0.1 403,690 - GFF393 0.17 -1.9 403,704 - GFF393 0.17 -0.6 403,704 - GFF393 0.17 -1.4 403,704 - GFF393 0.17 +1.2 403,747 - GFF393 0.20 +0.3 403,914 + GFF393 0.28 +0.6 403,992 + GFF393 0.32 +0.8 403,992 + GFF393 0.32 +0.1 403,993 - GFF393 0.32 -0.9
Or see this region's nucleotide sequence