Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3917 and GFF3918 are separated by 12 nucleotides GFF3918 and GFF3919 are separated by 165 nucleotides GFF3919 and GFF3920 are separated by 140 nucleotides
GFF3917 - hypothetical protein, at 286,979 to 287,455
GFF3917
GFF3918 - hypothetical protein, at 287,468 to 288,220
GFF3918
GFF3919 - hypothetical protein, at 288,386 to 289,309
GFF3919
GFF3920 - hypothetical protein, at 289,450 to 291,159
GFF3920
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.828 kb on + strand, within GFF3918 at 287.829 kb on - strand, within GFF3918 at 287.829 kb on - strand, within GFF3918 at 287.829 kb on - strand, within GFF3918 at 287.888 kb on + strand, within GFF3918 at 288.300 kb on - strand at 288.385 kb on + strand at 288.386 kb on - strand at 288.429 kb on - strand at 288.612 kb on - strand, within GFF3919 at 288.612 kb on - strand, within GFF3919 at 288.614 kb on - strand, within GFF3919 at 289.474 kb on + strand at 289.474 kb on + strand at 289.711 kb on + strand, within GFF3920 at 289.759 kb on + strand, within GFF3920 at 289.760 kb on - strand, within GFF3920 at 289.771 kb on + strand, within GFF3920 at 289.772 kb on - strand, within GFF3920 at 289.772 kb on - strand, within GFF3920 at 289.804 kb on + strand, within GFF3920 at 289.805 kb on - strand, within GFF3920 at 289.888 kb on + strand, within GFF3920 at 289.888 kb on + strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.889 kb on - strand, within GFF3920 at 289.900 kb on + strand, within GFF3920 at 289.900 kb on + strand, within GFF3920 at 290.090 kb on - strand, within GFF3920 at 290.090 kb on - strand, within GFF3920 at 290.090 kb on - strand, within GFF3920
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 287,828 + GFF3918 0.48 -1.2 287,829 - GFF3918 0.48 -0.5 287,829 - GFF3918 0.48 -0.3 287,829 - GFF3918 0.48 +0.7 287,888 + GFF3918 0.56 +1.4 288,300 - -0.3 288,385 + -0.6 288,386 - +0.5 288,429 - -0.3 288,612 - GFF3919 0.24 -2.1 288,612 - GFF3919 0.24 +0.1 288,614 - GFF3919 0.25 +0.2 289,474 + -0.4 289,474 + -0.0 289,711 + GFF3920 0.15 -0.5 289,759 + GFF3920 0.18 +0.6 289,760 - GFF3920 0.18 -1.9 289,771 + GFF3920 0.19 +0.0 289,772 - GFF3920 0.19 +0.1 289,772 - GFF3920 0.19 +0.0 289,804 + GFF3920 0.21 +0.6 289,805 - GFF3920 0.21 -0.7 289,888 + GFF3920 0.26 +1.3 289,888 + GFF3920 0.26 -1.7 289,889 - GFF3920 0.26 -1.3 289,889 - GFF3920 0.26 -0.8 289,889 - GFF3920 0.26 -0.0 289,889 - GFF3920 0.26 +0.1 289,900 + GFF3920 0.26 -1.5 289,900 + GFF3920 0.26 +0.2 290,090 - GFF3920 0.37 -0.0 290,090 - GFF3920 0.37 +0.2 290,090 - GFF3920 0.37 +0.2
Or see this region's nucleotide sequence