Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3906 and GFF3907 are separated by 221 nucleotides GFF3907 and GFF3908 are separated by 53 nucleotides GFF3908 and GFF3909 are separated by 455 nucleotides
GFF3906 - Acetyl-coenzyme A synthetase, at 273,057 to 274,604
GFF3906
GFF3907 - hypothetical protein, at 274,826 to 275,119
GFF3907
GFF3908 - hypothetical protein, at 275,173 to 275,865
GFF3908
GFF3909 - hypothetical protein, at 276,321 to 276,998
GFF3909
Position (kb) 275
276 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 274.300 kb on + strand, within GFF3906 at 274.581 kb on + strand at 274.582 kb on - strand at 274.582 kb on - strand at 274.588 kb on + strand at 274.633 kb on + strand at 274.633 kb on + strand at 274.634 kb on - strand at 274.924 kb on + strand, within GFF3907 at 274.924 kb on + strand, within GFF3907 at 274.924 kb on + strand, within GFF3907 at 275.903 kb on - strand at 275.974 kb on - strand at 275.974 kb on - strand at 276.118 kb on - strand at 276.118 kb on - strand at 276.281 kb on - strand at 276.633 kb on + strand, within GFF3909 at 276.633 kb on + strand, within GFF3909 at 276.634 kb on - strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.687 kb on + strand, within GFF3909 at 276.688 kb on - strand, within GFF3909
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 274,300 + GFF3906 0.80 +0.4 274,581 + -0.9 274,582 - -0.1 274,582 - -0.8 274,588 + +0.5 274,633 + +0.2 274,633 + -0.7 274,634 - -2.2 274,924 + GFF3907 0.33 +1.3 274,924 + GFF3907 0.33 +1.2 274,924 + GFF3907 0.33 +1.7 275,903 - -0.8 275,974 - -0.3 275,974 - -1.2 276,118 - -0.0 276,118 - +0.0 276,281 - +0.9 276,633 + GFF3909 0.46 -0.5 276,633 + GFF3909 0.46 +3.0 276,634 - GFF3909 0.46 +0.4 276,687 + GFF3909 0.54 +1.5 276,687 + GFF3909 0.54 +0.7 276,688 - GFF3909 0.54 +0.2
Or see this region's nucleotide sequence