Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3904 and GFF3905 are separated by 264 nucleotides GFF3905 and GFF3906 are separated by 3 nucleotides
GFF3904 - Monomeric sarcosine oxidase, at 270,894 to 272,021
GFF3904
GFF3905 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 272,286 to 273,053
GFF3905
GFF3906 - Acetyl-coenzyme A synthetase, at 273,057 to 274,604
GFF3906
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.474 kb on - strand, within GFF3904 at 271.557 kb on + strand, within GFF3904 at 271.557 kb on + strand, within GFF3904 at 271.558 kb on - strand, within GFF3904 at 271.665 kb on + strand, within GFF3904 at 271.666 kb on - strand, within GFF3904 at 272.003 kb on + strand at 272.004 kb on - strand at 272.004 kb on - strand at 272.065 kb on + strand at 272.066 kb on - strand at 272.137 kb on - strand at 272.205 kb on - strand at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.370 kb on + strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.371 kb on - strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 272.958 kb on + strand, within GFF3905 at 273.042 kb on + strand at 273.042 kb on + strand at 273.042 kb on + strand at 273.043 kb on - strand at 273.043 kb on - strand at 273.066 kb on + strand at 273.142 kb on + strand at 273.143 kb on - strand at 273.268 kb on - strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.385 kb on + strand, within GFF3906 at 273.386 kb on - strand, within GFF3906 at 273.472 kb on + strand, within GFF3906 at 273.473 kb on - strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.640 kb on + strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906 at 273.641 kb on - strand, within GFF3906
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 271,474 - GFF3904 0.51 +0.1 271,557 + GFF3904 0.59 -1.7 271,557 + GFF3904 0.59 -2.2 271,558 - GFF3904 0.59 -0.5 271,665 + GFF3904 0.68 +0.7 271,666 - GFF3904 0.68 -0.6 272,003 + +1.3 272,004 - +0.4 272,004 - +1.2 272,065 + +0.7 272,066 - -0.5 272,137 - -0.2 272,205 - -0.5 272,370 + GFF3905 0.11 -0.8 272,370 + GFF3905 0.11 +1.0 272,370 + GFF3905 0.11 -0.3 272,370 + GFF3905 0.11 +0.1 272,371 - GFF3905 0.11 -0.2 272,371 - GFF3905 0.11 +1.5 272,371 - GFF3905 0.11 -0.6 272,958 + GFF3905 0.88 +0.2 272,958 + GFF3905 0.88 -0.1 272,958 + GFF3905 0.88 +0.2 273,042 + -0.4 273,042 + -0.3 273,042 + +0.7 273,043 - +0.5 273,043 - +1.1 273,066 + +1.0 273,142 + +1.5 273,143 - -1.0 273,268 - GFF3906 0.14 -0.5 273,385 + GFF3906 0.21 -1.6 273,385 + GFF3906 0.21 +1.5 273,385 + GFF3906 0.21 -1.1 273,385 + GFF3906 0.21 +0.8 273,386 - GFF3906 0.21 -1.0 273,472 + GFF3906 0.27 -0.2 273,473 - GFF3906 0.27 -0.6 273,640 + GFF3906 0.38 -0.6 273,640 + GFF3906 0.38 -0.2 273,640 + GFF3906 0.38 +0.8 273,640 + GFF3906 0.38 -0.4 273,641 - GFF3906 0.38 +2.5 273,641 - GFF3906 0.38 -0.2 273,641 - GFF3906 0.38 -1.3 273,641 - GFF3906 0.38 -0.5 273,641 - GFF3906 0.38 -0.0 273,641 - GFF3906 0.38 -1.3
Or see this region's nucleotide sequence