Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3900 and GFF3901 are separated by 57 nucleotides GFF3901 and GFF3902 are separated by 139 nucleotides GFF3902 and GFF3903 are separated by 3 nucleotides
GFF3900 - Phosphomannomutase/phosphoglucomutase, at 266,122 to 267,621
GFF3900
GFF3901 - 2-dehydro-3-deoxygluconokinase, at 267,679 to 268,623
GFF3901
GFF3902 - hypothetical protein, at 268,763 to 269,470
GFF3902
GFF3903 - Aspartate/prephenate aminotransferase, at 269,474 to 270,661
GFF3903
Position (kb) 267
268
269 Strain fitness (log2 ratio) -1
0
1
2 at 267.812 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.239 kb on - strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.242 kb on - strand, within GFF3901 at 268.331 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.488 kb on - strand, within GFF3901 at 268.517 kb on + strand, within GFF3901 at 268.666 kb on + strand at 268.666 kb on + strand at 268.666 kb on + strand at 269.151 kb on + strand, within GFF3902 at 269.151 kb on + strand, within GFF3902 at 269.166 kb on + strand, within GFF3902 at 269.167 kb on - strand, within GFF3902 at 269.554 kb on - strand at 269.568 kb on + strand at 269.568 kb on + strand at 269.568 kb on + strand at 269.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 267,812 + GFF3901 0.14 +0.5 267,953 + GFF3901 0.29 -0.5 267,953 + GFF3901 0.29 +0.2 268,214 + GFF3901 0.57 +0.4 268,214 + GFF3901 0.57 -0.1 268,215 - GFF3901 0.57 +0.4 268,215 - GFF3901 0.57 -0.1 268,239 - GFF3901 0.59 -0.1 268,241 + GFF3901 0.59 +0.7 268,241 + GFF3901 0.59 -0.4 268,242 - GFF3901 0.60 -1.0 268,331 + GFF3901 0.69 +1.9 268,487 + GFF3901 0.86 -0.2 268,487 + GFF3901 0.86 +0.9 268,488 - GFF3901 0.86 +0.9 268,517 + GFF3901 0.89 -0.1 268,666 + -0.6 268,666 + -0.1 268,666 + -0.3 269,151 + GFF3902 0.55 -0.5 269,151 + GFF3902 0.55 +0.2 269,166 + GFF3902 0.57 -1.6 269,167 - GFF3902 0.57 +1.0 269,554 - +1.7 269,568 + +0.3 269,568 + -0.2 269,568 + +1.0 269,569 - -0.4
Or see this region's nucleotide sequence