Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3899 and GFF3900 are separated by 129 nucleotides GFF3900 and GFF3901 are separated by 57 nucleotides
GFF3899 - Succinyl-CoA:coenzyme A transferase, at 264,466 to 265,992
GFF3899
GFF3900 - Phosphomannomutase/phosphoglucomutase, at 266,122 to 267,621
GFF3900
GFF3901 - 2-dehydro-3-deoxygluconokinase, at 267,679 to 268,623
GFF3901
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1
2 at 265.337 kb on - strand, within GFF3899 at 265.433 kb on - strand, within GFF3899 at 265.462 kb on + strand, within GFF3899 at 265.567 kb on + strand, within GFF3899 at 265.568 kb on - strand, within GFF3899 at 265.651 kb on + strand, within GFF3899 at 265.651 kb on + strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 265.652 kb on - strand, within GFF3899 at 266.035 kb on - strand at 266.057 kb on - strand at 266.057 kb on - strand at 266.075 kb on + strand at 267.812 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 267.953 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.214 kb on + strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.215 kb on - strand, within GFF3901 at 268.239 kb on - strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.241 kb on + strand, within GFF3901 at 268.242 kb on - strand, within GFF3901 at 268.331 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.487 kb on + strand, within GFF3901 at 268.488 kb on - strand, within GFF3901 at 268.517 kb on + strand, within GFF3901
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 265,337 - GFF3899 0.57 +0.5 265,433 - GFF3899 0.63 +0.4 265,462 + GFF3899 0.65 +0.1 265,567 + GFF3899 0.72 +0.1 265,568 - GFF3899 0.72 +1.0 265,651 + GFF3899 0.78 +0.5 265,651 + GFF3899 0.78 +0.3 265,652 - GFF3899 0.78 -0.1 265,652 - GFF3899 0.78 -0.3 265,652 - GFF3899 0.78 +0.4 266,035 - +0.1 266,057 - +1.1 266,057 - +2.0 266,075 + -0.2 267,812 + GFF3901 0.14 +0.5 267,953 + GFF3901 0.29 -0.5 267,953 + GFF3901 0.29 +0.2 268,214 + GFF3901 0.57 +0.4 268,214 + GFF3901 0.57 -0.1 268,215 - GFF3901 0.57 +0.4 268,215 - GFF3901 0.57 -0.1 268,239 - GFF3901 0.59 -0.1 268,241 + GFF3901 0.59 +0.7 268,241 + GFF3901 0.59 -0.4 268,242 - GFF3901 0.60 -1.0 268,331 + GFF3901 0.69 +1.9 268,487 + GFF3901 0.86 -0.2 268,487 + GFF3901 0.86 +0.9 268,488 - GFF3901 0.86 +0.9 268,517 + GFF3901 0.89 -0.1
Or see this region's nucleotide sequence