Strain Fitness in Xanthobacter sp. DMC5 around GFF39

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF37 and GFF38 are separated by 100 nucleotidesGFF38 and GFF39 are separated by 11 nucleotidesGFF39 and GFF40 overlap by 4 nucleotides GFF37 - 5-keto-4-deoxy-D-glucarate aldolase, at 46,439 to 47,182 GFF37 GFF38 - Inner membrane ABC transporter permease protein YdcV, at 47,283 to 48,077 GFF38 GFF39 - Spermidine/putrescine transport system permease protein PotB, at 48,089 to 48,964 GFF39 GFF40 - Vitamin B12 import ATP-binding protein BtuD, at 48,961 to 50,055 GFF40 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1at 47.410 kb on + strand, within GFF38at 47.410 kb on + strand, within GFF38at 47.410 kb on + strand, within GFF38at 47.411 kb on - strand, within GFF38at 47.411 kb on - strand, within GFF38at 47.411 kb on - strand, within GFF38at 47.411 kb on - strand, within GFF38at 47.809 kb on - strand, within GFF38at 47.809 kb on - strand, within GFF38at 47.818 kb on + strand, within GFF38at 47.819 kb on - strand, within GFF38at 47.927 kb on - strand, within GFF38at 47.994 kb on + strand, within GFF38at 48.030 kb on - strandat 48.118 kb on - strandat 48.207 kb on + strand, within GFF39at 48.207 kb on + strand, within GFF39at 48.208 kb on - strand, within GFF39at 48.438 kb on + strand, within GFF39at 48.439 kb on - strand, within GFF39at 48.439 kb on - strand, within GFF39at 48.439 kb on - strand, within GFF39at 48.573 kb on + strand, within GFF39at 48.573 kb on + strand, within GFF39at 48.787 kb on - strand, within GFF39at 48.975 kb on - strandat 49.094 kb on + strand, within GFF40at 49.346 kb on + strand, within GFF40at 49.346 kb on + strand, within GFF40at 49.347 kb on - strand, within GFF40at 49.760 kb on + strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.761 kb on - strand, within GFF40at 49.793 kb on + strand, within GFF40at 49.794 kb on - strand, within GFF40at 49.833 kb on + strand, within GFF40

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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47,410 + GFF38 0.16 -0.9
47,410 + GFF38 0.16 -0.7
47,410 + GFF38 0.16 -1.4
47,411 - GFF38 0.16 -1.4
47,411 - GFF38 0.16 +0.1
47,411 - GFF38 0.16 -0.0
47,411 - GFF38 0.16 +1.2
47,809 - GFF38 0.66 -0.3
47,809 - GFF38 0.66 -0.1
47,818 + GFF38 0.67 -1.6
47,819 - GFF38 0.67 +0.3
47,927 - GFF38 0.81 +0.5
47,994 + GFF38 0.89 +0.6
48,030 - -1.2
48,118 - +0.4
48,207 + GFF39 0.13 -2.5
48,207 + GFF39 0.13 -1.1
48,208 - GFF39 0.14 -0.6
48,438 + GFF39 0.40 -1.0
48,439 - GFF39 0.40 +0.2
48,439 - GFF39 0.40 -0.4
48,439 - GFF39 0.40 -0.4
48,573 + GFF39 0.55 -0.5
48,573 + GFF39 0.55 -0.5
48,787 - GFF39 0.80 -0.8
48,975 - -0.3
49,094 + GFF40 0.12 +0.2
49,346 + GFF40 0.35 -0.7
49,346 + GFF40 0.35 -0.3
49,347 - GFF40 0.35 -0.4
49,760 + GFF40 0.73 +0.3
49,761 - GFF40 0.73 +0.1
49,761 - GFF40 0.73 -0.5
49,761 - GFF40 0.73 -0.2
49,761 - GFF40 0.73 -1.4
49,761 - GFF40 0.73 +0.2
49,761 - GFF40 0.73 +0.6
49,761 - GFF40 0.73 -0.8
49,761 - GFF40 0.73 -1.3
49,793 + GFF40 0.76 +0.0
49,794 - GFF40 0.76 +0.6
49,833 + GFF40 0.80 +1.6

Or see this region's nucleotide sequence